R Observatory: Metrics for ocrRBBR version 0.1.0

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

ocrRBBR

0.1.0

Explain Gene Expression with Boolean Rules of Chromatin States

0packages depend

1.4Kdownloads / year

–test coverage

13/13checks pass

Overview

About

Maintained by Seyed Amir MalekpourFirst published 2026-02-091 releasesCRAN page ↗GitHub ↗

Infers Boolean rules among cis-regulatory regions using paired chromatin accessibility and gene expression data at bulk and single-cell levels. Links regulatory regions to target genes, providing insights into gene regulation mechanisms.

Install

R (CRAN)pak (dev)Ubuntu (r2u)

install.packages("ocrRBBR", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("CompBioIPM/ocrRBBR")

Development version from CompBioIPM/ocrRBBR. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-ocrrbbr

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

Health

CRAN checks

13OK

Slowest check: 4.0 min · r-oldrel-macos-x86_64

Code health

Yes

Tests · ratio 0.01

not tracked

Coverage

100%

Documentation · exports

12

Dependencies · direct

Check history

OK2026-08-05
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-08-01
12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-06-09
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-06-08
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-05-10
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Show 2 earlier snapshots

ERROR2026-05-03
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMENoVignettesNopkgdown siteNoNEWSYes · 67% structuredCode of conductNoContributing guideNo

Examples that run: 67%
Documented parameters: 100%
Return-value docs: 100%
References docs: 0%

Downloads

1.4K

CRAN downloads in the past year

Rank #17,685 · ~4/day · ~113/mo

Releases R versions

Daily download trend is not available in this view yet.

19530 days

61390 days

1.4K1 year

Compare downloads with other packages →

Also on51 r2u

Repository

GitHub ↗ compbioipm/ocrrbbr

0Stars

1Forks

0Open issues

0Open PRs

0Releases

134Commits

2Contributors

134 commits · Last activity 2026-02-09

Forks over time

2026-01-09 · 12026-07-07 · 1

Repository practices

Upstream repositoryBeta

4 development-tooling and community-health practices detected across 3 families in the upstream repository

Checks run against github.com/compbioipm/ocrrbbr on 2026-08-16.

Continuous integration (1)

GitHub Actions

CRAN release process (2)

cran-comments.mdCRAN-SUBMISSION

Lint, format, editor (1)

RStudio project

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

8 external dependencies (excludes base and recommended)

Depends (1)

R >= 4.4

Imports (12)

doParallel dplyr foreach GenomeInfoDb GenomicRanges glmnetMatrixparallelrtracklayer S4Vectorsstatsutils

LinkingTo (0)

none

Suggests (0)

none

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

Datasets

People & History

People (1)

Maintainer (1)

Seyed Amir Malekpour

Author, Maintainer

Authors (1)

Seyed Amir Malekpour

Author, Maintainer

Package Timeline

1 release. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
0.1.0Latest
2026-03-10 · current release
R
R 4.5.0 released · 2025-04-11

Package metadata

First published: 2026-02-09
Total releases: 1 / 1 yrs
License: GPL-3 OSI
Minimum R: ≥ 4.4
Bundled data: 2.7 MB / 1 file
Download size: 2.8 MB
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("ocrRBBR")

Format

Malekpour, S. A. (2026). ocrRBBR: Explain Gene Expression with Boolean Rules of Chromatin States (Version 0.1.0) [Computer software]. https://doi.org/10.32614/CRAN.package.ocrRBBR

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for ocrRBBR version 0.1.0 [Data set]. HJJB, LLC. Data release v2026-08-22. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-22, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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