R Observatory: Metrics for ocrRBBR version 0.1.0

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

ocrRBBR

0.1.0Package record

Explain Gene Expression with Boolean Rules of Chromatin States

0packages depend

1.9Kdownloads / year

–test coverage

13/13flavors OK

Overview

About

Maintained by Seyed Amir MalekpourCRAN page ↗GitHub ↗

Infers Boolean rules among cis-regulatory regions using paired chromatin accessibility and gene expression data at bulk and single-cell levels. Links regulatory regions to target genes, providing insights into gene regulation mechanisms.

Changes in 0.1.0

First public release.

From NEWS.md in the release

Install

R (CRAN)pak (dev)Ubuntu (r2u)

install.packages("ocrRBBR", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("CompBioIPM/ocrRBBR")

Development version from CompBioIPM/ocrRBBR. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-ocrrbbr

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

Health

CRAN checks

13OK

CRAN check page ↗

Slowest check: 4.0 min · r-oldrel-macos-x86_64

Status changes

OK13 OK2026-08-05
NOTE12 OK, 1 NOTE2026-08-01
OK13 OK2026-06-09
ERROR12 OK, 1 ERROR2026-06-08
OK13 OK2026-05-10

Show 2 earlier changesHide 2 earlier changes

ERROR12 OK, 1 ERROR2026-05-03
OK14 OK2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 0.1.0

README· In the repository, left out of the releaseVignettesNoNEWSYes · 67% structured · mentions 0.1.0Citation fileNoWebsitenot declared in DESCRIPTION

Help pages: 11
Examples that run: 67%2 run in a plain check · 1 only when donttest examples are enabled (R CMD check --as-cran)
Exported functions with examples: 75%
Documented parameters: 100%
Return-value docs: 100%
Help pages citing references: 0%

How these are measured

Downloads

1.9K

CRAN downloads in the past year

Rank #17,762 · ~5/day · ~155/mo

Releases R versions

Daily download trend is not available in this view yet.

30930 days

71390 days

1.9K1 year

Compare downloads with other packages →

Also on56 r2u

How downloads are counted

Repository

compbioipm/ocrrbbr ↗Account: CompBioIPM

0Stars

1Forks

0Open issues

0Open PRs

0Releases

134Commits

2Commit identities

134 commits · Last activity 2026-02-09

Responsiveness

not measured

Forks over time

2026-01-09 · 12026-07-07 · 1

How these are measured

PracticesBeta

4 development-tooling and community-health practices detected across 3 families in the upstream repository

Checks run against github.com/compbioipm/ocrrbbr on 2026-10-11.

Continuous integration (1)

GitHub Actions

CRAN release process (2)

cran-comments.mdCRAN-SUBMISSION

Lint, format, editor (1)

RStudio project

How this is detected·Detection ruleset v3 (2026-09-26)

Dependencies

Declared dependencies

8 external dependencies (excludes base and recommended)

Installing ocrRBBR adds 22 packages (12 with compiled code, 13 MB of source tarballs). Heaviest: glmnet 2.7 MB, Rcpp 1.8 MB, RcppEigen 1.7 MB. 4 more not on CRAN are not measured.

Depends (1)

R >= 4.4

Imports (12)

doParallel dplyr foreach GenomeInfoDb GenomicRanges glmnetMatrixparallelrtracklayer S4Vectorsstatsutils

LinkingTo (0)

none

Suggests (0)

none

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

How these are counted

Code & Tests

Datasets

People & History

People (1)

Seyed Amir Malekpour

Author, Maintainer since 0.1.0 (2026)

Releases (1)

R
R 4.6.0 released · 2026-04-24
0.1.0Latest
record
2026-02-09 · current release
R
R 4.5.0 released · 2025-04-11

Package metadata

First published: 2026-02-09
Total releases: 1 / 1 yrs
License: GPL-3 OSI
Minimum R: ≥ 4.4
Bundled data: 2.7 MB / 1 file
Download size: 2.8 MB

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("ocrRBBR")

Format

Malekpour, S. A. (2026). ocrRBBR: Explain Gene Expression with Boolean Rules of Chromatin States (Version 0.1.0) [Computer software]. https://doi.org/10.32614/CRAN.package.ocrRBBR

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for ocrRBBR version 0.1.0 [Data set]. HJJB, LLC. Data release v2026-10-18. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-18, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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