o2geosocial
Reconstruction of Transmission Chains from Surveillance Data
v1.1.3
·
Jun 21, 2024
·
MIT + file LICENSE
Description
Bayesian reconstruction of who infected whom during past outbreaks using routinely-collected surveillance data. Inference of transmission trees using genotype, age specific social contacts, distance between cases and onset dates of the reported cases. (Robert A, Kucharski AJ, Gastanaduy PA, Paul P, Funk S. (2020) <doi:10.1098/rsif.2020.0084>).
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