R Observatory: Metrics for nucim version 1.0.13

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

nucim

1.0.13

Nucleome Imaging Toolbox

0packages depend

4Kdownloads / year

–test coverage

12/13checks pass

Overview

About

Maintained by Volker SchmidFirst published 2016-10-156 releasesCRAN page ↗GitHub ↗

Tools for 4D nucleome imaging. Quantitative analysis of the 3D nuclear landscape recorded with super-resolved fluorescence microscopy. See Volker J. Schmid, Marion Cremer, Thomas Cremer (2017) doi:10.1016/j.ymeth.2017.03.013.

Install

R (CRAN)pak (dev)Ubuntu (r2u)

install.packages("nucim", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("bioimaginggroup/nucim")

Development version from bioimaginggroup/nucim. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-nucim

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

Health

CRAN checks

1ERROR12OK

Failing flavors

ERROR r-oldrel-macos-arm64

Slowest check: 2.2 min · r-oldrel-windows-x86_64

Code health

None

Tests · ratio 0.00

not tracked

Coverage

100%

Documentation · exports

5

Dependencies · direct

Check history

ERROR2026-03-10
12 OK · 0 NOTE · 0 WARNING · 2 ERROR · 0 FAILURE

Documentation

READMEYes · 213 wordsVignettesYes · dynamicpkgdown siteNoNEWSYes · 100% structuredCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: 99%
Return-value docs: 93%
References docs: 0%

Downloads

4K

CRAN downloads in the past year

Rank #9,219 · ~11/day · ~331/mo

Releases R versions

Daily download trend is not available in this view yet.

20430 days

1K90 days

4K1 year

Compare downloads with other packages →

Also on99 r2u

Repository

GitHub ↗ bioimaginggroup/nucim

2Stars

0Forks

0Open issues

0Open PRs

0Releases

287Commits

7Contributors

287 commits · Last activity 2026-01-12

Stars over time

2017-11-18 · 22026-07-07 · 2

Repository practices

Upstream repositoryBeta

3 development-tooling and community-health practices detected across 2 families in the upstream repository

Checks run against github.com/bioimaginggroup/nucim on 2026-08-23.

Continuous integration (1)

GitHub Actions

CRAN release process (2)

cran-comments.mdCRAN-SUBMISSION

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

7 external dependencies (excludes base and recommended)

Depends (3)

R >= 3.0.0EBImage bioimagetools

Imports (3)

fieldsparallelstringr

LinkingTo (0)

none

Suggests (3)

knitr rmarkdown R.rsp

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

People & History

People (1)

Maintainer (1)

Volker Schmid

Author, Maintainer

Authors (1)

Volker Schmid

Author, Maintainer

Package Timeline

6 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
1.0.13Latest
2026-01-12 · current release · diff ↗
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
1.0.11
2021-06-10 · diff ↗
R
R 4.1.0 released · 2021-05-18
1.0.9
2020-05-29 · diff ↗
R
R 4.0.0 released · 2020-04-24
R
R 3.6.0 released · 2019-04-26
1.0.6
2018-10-09 · diff ↗
R
R 3.5.0 released · 2018-04-23
R
R 3.4.0 released · 2017-04-21
1.0.0
2016-12-05 · diff ↗
0.5.3
2016-10-15

Show 1 earlier events

R
R 3.3.0 released · 2016-05-03

Package metadata

First published: 2016-10-15
Total releases: 6 / 10 yrs
License: GPL-3 OSI
Minimum R: ≥ 3.0.0
Download size: 89 KB
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("nucim")

Format

Schmid, V. (2026). nucim: Nucleome Imaging Toolbox (Version 1.0.13) [Computer software]. https://doi.org/10.32614/CRAN.package.nucim

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for nucim version 1.0.13 [Data set]. HJJB, LLC. Data release v2026-08-23. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-23, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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