R Observatory: Metrics for normfluodbf version 2.0.3

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

normfluodbf

2.0.3Package record

Cleans and Normalizes FLUOstar DBF and DAT Files from 'Liposome' Flux Assays

0packages depend

6.5Kdownloads / year

18.2%test coverage

13/13flavors OK

Overview

About

Maintained by Tingwei AdeckCRAN page ↗GitHub ↗Website ↗Issues ↗

Cleans and Normalizes FLUOstar DBF and DAT Files obtained from liposome flux assays. Users should verify extended usage of the package on files from other assay types.

Changes in 2.0.3

Released to support ggplot2 in lunching their new version 3.5.2.

normfluodat can now be used with just the DAT file and no need for additional parameters. Major win for the TEAM!

Bumped up since CRAN did not yet respond to 2.0.1 and there were some failed tests. This should be the final one for the ggplot2 issue.

From NEWS.md in the release

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("normfluodbf", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("AlphaPrime7/normfluodbf")

Development version from AlphaPrime7/normfluodbf. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-normfluodbf

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-normfluodbf

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-normfluodbf

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

13OK

CRAN check page ↗

Slowest check: 4.3 min · r-oldrel-windows-x86_64

Status changes

OK13 OK2026-08-05
NOTE12 OK, 1 NOTE2026-08-01
OK13 OK2026-06-09
ERROR12 OK, 1 ERROR2026-06-08
OK13 OK2026-05-01

Show 2 earlier changesHide 2 earlier changes

WARNING10 OK, 3 NOTE, 1 WARNING2026-03-21
NOTE11 OK, 3 NOTE2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 2.0.3

READMEYes · 3,138 wordsVignettesYes · 2 · dynamicNEWSYes · 100% structured · mentions 2.0.3Citation fileNoWebsiteYes · pkgdown

The repository also keeps web-only articles.

Help pages: 98 (11 internal)includes a package overview page
Examples that run: 0%66 never run
Exported functions with examples: 79%
Documented parameters: 97%
Return-value docs: 95%
Help pages citing references: 0%

Vignettes (2)

normfluodbf HTML
test_file HTML

How these are measured

Downloads

6.5K

CRAN downloads in the past year

Rank #8,273 · ~18/day · ~544/mo

Releases R versions

Daily download trend is not available in this view yet.

38130 days

1.1K90 days

6.5K1 year

Compare downloads with other packages →

Also on150 r2u4 autocran

How downloads are counted

Repository

alphaprime7/normfluodbf ↗Account: AlphaPrime7

0Stars

1Forks

1Open issues

1Open PRs

7Releases

455Commits

1Commit identities

biophysicsopticsresearchfluorometryflux-assaysliposomes

455 commits · Last activity 2026-02-26

Responsiveness

How these are sampled

PRs merged (all time): 100%
Median days to close, 50 most recently updated closed issues: 13
Median days to close, 50 most recently updated closed PRs: 0

Issues over time

2026-07-14 · 02026-08-20 · 1

How these are measured

PracticesBeta

14 development-tooling and community-health practices detected across 8 families in the upstream repository

Checks run against github.com/alphaprime7/normfluodbf on 2026-10-22.

Continuous integration (2)

GitHub ActionsR CMD check workflow

The R CMD check workflow runs on Linux, macOS and Windows, and on R-devel

Governance and community (3)

Code of conductFunding

Funding links: GitHub Sponsors

The repository owner accepts GitHub Sponsors

Docs source (4)

README.Rmdpkgdown

GitHub Pages site last deployed 2024-04-15 · The repository has a site deploy workflow

pkgdown site last built 2023-12-12, before release 2.0.3 (2025-10-10)

Coverage (1)

Coverage reporting (Codecov)

Show all practicesHide 4 practices

Reproducibility and dev environment (1)

data-raw/

CRAN release process (1)

cran-comments.md

Lint, format, editor (1)

RStudio project

Git structural (1)

.gitattributes

How this is detected·Detection ruleset v4 (2026-10-20)

Dependencies

Declared dependencies

28 external dependencies (excludes base and recommended)

Installing normfluodbf adds 123 packages (54 with compiled code, 102 MB of source tarballs). Heaviest: stringi 11 MB, ggplot2 6.0 MB, data.table 5.7 MB.

Depends (6)

R >= 4.3.0dplyrforeignggplot2 plotly data.table

Imports (22)

shiny tidyr tibble emojifontstatsbadger stringr magrittr assertthat forcats gridExtra pkgsearch purrr rlang rstudioapi wesanderson hexSticker pbdZMQ httr2 glue cli testthat (>= 3.2.1)

LinkingTo (0)

none

Suggests (3)

knitr learnr rmarkdown

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

How these are counted

Code & Tests

Datasets

People & History

People (3)

Tingwei Adeck

Amina Adeck

Copyright holder · added in 2.0.0

Tesla Adeck

Copyright holder · added in 2.0.0

Listed in earlier versions (1)

normfluodbf authors

no longer listed · 1.4.3 to 1.5.2

Releases (6)

Pick two releases to compare their code metrics.

R
R 4.6.0 released · 2026-04-24
2.0.3Latest
record
2025-10-10 · current release · diff ↗ ·
removed 1 export
demo

added 12 exports
actual_cycles, actual_rows_used, find_random_port, fluor_threshold_check_new, get_tnp, run_demo, run_demo_bg, run_demo_in_background, run_demo_script, shiny_random_port, subset_for_layout, viewerpane_background_normfluodbf
R
R 4.5.0 released · 2025-04-11
2.0.0
record
2024-09-28 · diff ↗ ·
removed 6 exports
check_dat, check_dbf, clean_odd_cc, fluor_threshold_check_raw, ggplot_tnp, time_attribute

added 134 exports
dirty<-, load_plate_data<-, load_plate_meta<-, name<-, params<-, status<-, steps<-, x_var_one<-, x_var_one_label<-, x_var_two<-, x_var_two_label<-, y_var<-, .next_step, .step_name, add_package_namespace, analyze_ready, average_fluorescence_by_row_cycle, capitalize, check_broken_packages, check_cols_class, check_dirt, check_package_usage, check_step, child_plate_type, clean_commas, clean_even_dat, comment_out_lines, decimal_scaling_df, define_params, define_status and 104 more
R
R 4.4.0 released · 2024-04-24
1.5.2
record
2023-11-28 · diff ↗ ·
added 13 exports
actual_cols_used, check_dat, check_dbf, norm_applier, normfluodatfull, normfluodatlite, resample_dat_scale_alt_bf_na, resample_dat_scale_alt_bfv, resample_dat_scale_alt_na, resample_dat_scale_naretainer, resample_dat_scale_optimus_backend, resample_dat_scale_optimus_na, time_attribute
1.5.1
record
2023-11-20 · diff ↗
1.5.0
record
2023-11-11 · diff ↗ ·
added 24 exports
clean_odd_cc, clean_odddat_optimus, comma_cleaner, dat_col_names_horizontal, dat_col_names_optimus, dat_col_names_prime, dat_col_names_rigid, decimal_scaling, fluor_threshold_check, fluor_threshold_check_na, fluor_threshold_check_raw, ggplot_tnp, log_transformation, min_max_norm_percent, norm_z, normfluodat, normfluordat, normfluordbf, resample_dat, resample_dat_alt, resample_dat_scale, resample_dat_scale_alt, resample_dat_scale_optimus, roundfluor
1.4.3
record
2023-08-25
R
R 4.3.0 released · 2023-04-21

Package metadata

First published: 2023-08-25
Total releases: 6 / 3 yrs
License: MIT + file LICENSE OSI
Minimum R: ≥ 4.3.0
Bundled data: 21 KB / 13 files
Download size: 8.7 MB

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("normfluodbf")

Format

Adeck, T., Adeck, A., & Adeck, T. (2025). normfluodbf: Cleans and Normalizes FLUOstar DBF and DAT Files from 'Liposome' Flux Assays (Version 2.0.3) [Computer software]. https://doi.org/10.32614/CRAN.package.normfluodbf

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for normfluodbf version 2.0.3 [Data set]. HJJB, LLC. Data release v2026-10-24. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-24, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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