nlsMicrobio

1.0-0

Nonlinear Regression in Predictive Microbiology

1packages depend

4.6Kdownloads / year

–test coverage

12/13checks pass

Overview

About

Maintained by Aurelie SiberchicotFirst published 2014-06-253 releasesCRAN page ↗GitHub ↗

Data sets and nonlinear regression models dedicated to predictive microbiology.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("nlsMicrobio", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("lbbe-software/nlsMicrobio")

Development version from lbbe-software/nlsMicrobio. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-nlsmicrobio

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-nlsMicrobio

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-nlsMicrobio

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

1NOTE12OK

Failing flavors

NOTE r-devel-linux-x86_64-debian-gcc

Slowest check: 1.7 min · r-release-macos-x86_64

Code health

None

Tests · ratio 0.00

not tracked

Coverage

100%

Documentation · exports

Dependencies · direct

Check history

NOTE2026-08-01
12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-07-16
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
WARNING2026-07-15
12 OK · 0 NOTE · 1 WARNING · 0 ERROR · 0 FAILURE
OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 93 wordsVignettesYes · dynamicpkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: not tracked
Return-value docs: 100%
References docs: 63%

Downloads

4.6K

CRAN downloads in the past year

Rank #12,038 · ~13/day · ~382/mo

Releases R versions

Daily download trend is not available in this view yet.

27030 days

84190 days

4.6K1 year

Compare downloads with other packages →

Also on102 r2u

Repository

GitHub ↗ lbbe-software/nlsmicrobio

2Stars

0Forks

0Open issues

0Open PRs

2Releases

41Commits

2Contributors

41 commits · Last activity 2025-03-04 · 0% stars, 30d

Stars over time

2023-02-04 · 12026-07-07 · 2

Repository practices

Upstream repositoryBeta

2 development-tooling and community-health practices detected across 2 families in the upstream repository

Checks run against github.com/lbbe-software/nlsmicrobio on 2026-07-31.

Continuous integration (1)

GitHub Actions

Research and citation (1)

codemeta.json

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

2 external dependencies (excludes base and recommended)

Depends (2)

statsnlstools

Imports (0)

none

LinkingTo (0)

none

Suggests (1)

knitr

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

1direct

0indirect

miLAG

Code & Tests

Datasets

People & History

People (3)

Maintainer (1)

Aurelie Siberchicot

Author, Maintainer · added in 0.0-3

Authors (3)

Aurelie Siberchicot

Author, Maintainer · added in 0.0-3

Florent Baty

Author

Marie-Laure Delignette-Muller

Author

Package Timeline

3 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
1.0-0Latest
2024-02-13 · current release · diff ↗
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
0.0-3
2021-09-17 · diff ↗
R
R 4.1.0 released · 2021-05-18
R
R 4.0.0 released · 2020-04-24
R
R 3.6.0 released · 2019-04-26
R
R 3.5.0 released · 2018-04-23
R
R 3.4.0 released · 2017-04-21
R
R 3.3.0 released · 2016-05-03
R
R 3.2.0 released · 2015-04-16
0.0-1
2014-06-25
R
R 3.1.0 released · 2014-04-10

Package metadata

First published: 2014-06-25
Total releases: 3 / 12 yrs
License: GPL-3 OSI
Bundled data: 4.7 KB / 10 files
Download size: 617 KB
Installed size: not tracked yet
With dependencies: not tracked yet

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