This package was removed from CRAN on 2026-02-19. Its history is shown below.

Reason: requires archived package 'leaflet.extras'

Details below reflect version 0.5.2, its last release before removal.

naturaList

0.5.2

Classify Occurrences by Confidence Levels in the Species ID

0packages depend

–downloads / year

–test coverage

–checks pass

Overview

About

Maintained by Arthur Vinicius Rodrigues5 releasesCRAN page ↗GitHub ↗

Classify occurrence records based on confidence levels of species identification. In addition, implement tools to filter occurrences inside grid cells and to manually check for possibles errors with an interactive shiny application.

Install

R (source archive)pak (dev)Ubuntu (r2u)openSUSE (OBS)

url <- "https://cran.r-project.org/src/contrib/Archive/naturaList/naturaList_0.5.2.tar.gz"
pkgFile <- "naturaList_0.5.2.tar.gz"
download.file(url, pkgFile)
install.packages(pkgFile, type = "source", repos = NULL)

This package is no longer on CRAN, so install.packages() cannot fetch it by name. This downloads the last archived source (0.5.2) and builds it locally. Install its dependencies first, and note that building from source needs the usual compiler toolchain.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("avrodrigues/naturaList")

Development version from avrodrigues/naturaList. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-naturalist

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-naturaList

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

CRAN check results are not tracked yet.

Code health

Yes

Tests · ratio 0.03

not tracked

Coverage

89%

Documentation · exports

Dependencies · direct

Documentation

READMEYes · 433 wordsVignettesYes · dynamicpkgdown siteNoNEWSYes · 100% structuredCode of conductNoContributing guideNo

Examples that run: 38%
Documented parameters: 100%
Return-value docs: 100%
References docs: 4%

Downloads

Releases R versions

Daily download trend is not available in this view yet.

Compare downloads with other packages →

Also on107 r2u30 autocran

Dependencies

Declared dependencies

24 external dependencies (excludes base and recommended)

Depends (1)

R >= 2.10

Imports (19)

shiny shinyWidgets dplyr stringr sp raster shinydashboard leaflet leaflet.extras tidytext magrittr vegan fasterize sf htmltoolsmethodsrlang tm stringi

LinkingTo (0)

none

Suggests (6)

knitr rmarkdown testthat rnaturalearth lwgeom shinyLP

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

–indirect (not tracked)

Nothing depends on this yet.

Code & Tests

Code Composition

R 2,538 (61%)Rd 1,255 (30%)Vignettes 367 (9%)

Code characteristics

Cyclomatic complexity: 3.0 median / 29 max
Test cases: 4 / 0.03 per code line

Test coverage

Line coverage

–

Expression

–

Tests / Examples

–

Functions

19 8 exported

Complexity

7.2 avg / 29 max

Call network

19 nodes / 10 edges

Test coverage has not been measured for this package yet; nodes fall back to a neutral fill.

Call graph

Open call graph →

Loading call graph…

Lowest coverage

Per-function coverage is not measured for this package yet.

Datasets

Bundled datasets · 4

Name	Class	Rows × Cols	Also ships in
A.setosa	data.frame	508 × 45	–
cyathea.br	data.frame	3,851 × 50	–
spec_names_ex	vector	–	–
speciaLists	data.frame	27 × 8	–

People & History

People (3)

Maintainer (1)

Arthur Vinicius Rodrigues

Author, Maintainer · added in 0.5.0

Authors (3)

Arthur Vinicius Rodrigues

Author, Maintainer · added in 0.5.0

Gabriel Nakamura

Author

Leandro Duarte

Author

Package Timeline

5 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
archivedRemoved from CRAN
2026-02-19
requires archived package 'leaflet.extras'
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
0.5.2
2024-02-06 · diff ↗
0.5.1
2023-04-27 · diff ↗
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
0.5.0
2022-04-20 · diff ↗
0.4.2
2021-10-16 · diff ↗
0.4.1
2021-08-21
R
R 4.1.0 released · 2021-05-18

Package metadata

Total releases: 5
License: MIT + file LICENSE OSI
Minimum R: ≥ 2.10
Bundled data: 458 KB / 6 files
Download size: not tracked yet
Installed size: not tracked yet
With dependencies: not tracked yet

Report a problem with this page →