R Observatory: Metrics for natmanager version 0.5.2

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

natmanager

0.5.2

Install the 'Natverse' Packages from Scratch

0packages depend

3.8Kdownloads / year

10.6%test coverage

13/13checks pass

Overview

About

Maintained by Gregory JefferisFirst published 2020-02-119 releasesCRAN page ↗GitHub ↗

Provides streamlined installation for packages from the 'natverse', a suite of R packages for computational neuroanatomy built on top of the 'nat' 'NeuroAnatomy Toolbox' package. Installation of the complete 'natverse' suite requires a 'GitHub' user account and personal access token 'GITHUB_PAT'. 'natmanager' will help the end user set this up if necessary.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("natmanager", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("natverse/natmanager")

Development version from natverse/natmanager. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-natmanager

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-natmanager

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-natmanager

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 1.1 min · r-oldrel-windows-x86_64

Code health

Yes

Tests · ratio 0.20

10.6%

Coverage · measured lines

100%

Documentation · exports

7

Dependencies · direct

Check history

OK2026-08-05
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-08-01
12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 51 wordsVignettesNopkgdown siteNoNEWSYes · 100% structuredCode of conductNoContributing guideNo

Examples that run: 25%
Documented parameters: 100%
Return-value docs: 100%
References docs: 0%

Downloads

3.8K

CRAN downloads in the past year

Rank #14,409 · ~10/day · ~316/mo

Releases R versions

Daily download trend is not available in this view yet.

15530 days

71690 days

3.8K1 year

Compare downloads with other packages →

Also on108 r2u10 autocran

Repository

GitHub ↗ natverse/natmanager

4Stars

0Forks

0Open issues

0Open PRs

6Releases

349Commits

2Contributors

349 commits · Last activity 2025-08-18

Stars over time

2025-03-21 · 42026-07-07 · 4

Repository practices

Upstream repositoryBeta

6 development-tooling and community-health practices detected across 5 families in the upstream repository

Checks run against github.com/natverse/natmanager on 2026-08-16.

Continuous integration (1)

GitHub Actions

CRAN release process (2)

cran-comments.mdCRAN-SUBMISSION

Docs source (1)

README.Rmd

Lint, format, editor (1)

RStudio project

Show all practices

Coverage (1)

Codecov

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

13 external dependencies (excludes base and recommended)

Depends (0)

none

Imports (7)

ghutilsremotes pak usethis curl withr

LinkingTo (0)

none

Suggests (7)

testthat knitr mockery rstudioapi covr spelling rappdirs

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

People & History

People (2)

Maintainer (1)

Gregory Jefferis

Author, Maintainer · added in 0.4.0

Authors (2)

Gregory Jefferis

Author, Maintainer · added in 0.4.0

Sridhar Jagannathan

Author

Package Timeline

9 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
0.5.2Latest
2025-08-18 · current release · diff ↗
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
0.5.1
2023-09-11 · diff ↗
0.5.0
2023-09-06 · diff ↗
R
R 4.3.0 released · 2023-04-21
0.4.9
2022-08-08 · diff ↗
unarchivedReturned to CRAN
2022-08-08
archivedRemoved from CRAN
2022-06-11
check issues were not corrected in time
R
R 4.2.0 released · 2022-04-22
0.4.8
2021-05-30 · diff ↗
R
R 4.1.0 released · 2021-05-18
0.4.7
2021-01-07 · diff ↗
0.4.6
2020-07-06 · diff ↗
R
R 4.0.0 released · 2020-04-24

Show 3 earlier events

0.4.0
2020-03-11 · diff ↗
0.1.0
2020-02-11
R
R 3.6.0 released · 2019-04-26

Package metadata

First published: 2020-02-11
Total releases: 9 / 6 yrs
License: GPL-3 OSI
Download size: 10 KB
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("natmanager")

Format

Jefferis, G., & Jagannathan, S. (2025). natmanager: Install the 'Natverse' Packages from Scratch (Version 0.5.2) [Computer software]. https://doi.org/10.32614/CRAN.package.natmanager

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for natmanager version 0.5.2 [Data set]. HJJB, LLC. Data release v2026-08-16. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-16, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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