This package was removed from CRAN on 2021-10-05. Its history is shown below.

Reason: check problems were not corrected in time

Details below reflect version 2021.9-12, its last release before removal.

nCal

2021.9-12

Nonlinear Calibration

0packages depend

–downloads / year

–test coverage

–checks pass

Overview

About

Maintained by Youyi Fong18 releasesCRAN page ↗

Performs nonlinear calibration and curve fitting for data from Luminex, RT-PCR, ELISA, RPPA etc. Its precursor is Ruminex. This package is described in Fong et al. (2013) DOI:10.1093/bioinformatics/btt456.

Install

R (source archive)openSUSE (OBS)

url <- "https://cran.r-project.org/src/contrib/Archive/nCal/nCal_2021.9-12.tar.gz"
pkgFile <- "nCal_2021.9-12.tar.gz"
download.file(url, pkgFile)
install.packages(pkgFile, type = "source", repos = NULL)

This package is no longer on CRAN, so install.packages() cannot fetch it by name. This downloads the last archived source (2021.9-12) and builds it locally. Install its dependencies first, and note that building from source needs the usual compiler toolchain.

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-nCal

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

CRAN check results are not tracked yet.

Code health

Yes

Tests · ratio 0.02

not tracked

Coverage

100%

Documentation · exports

Dependencies · direct

Documentation

READMENoVignettesNopkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: 67%
Documented parameters: 92%
Return-value docs: 56%
References docs: 38%

Downloads

nCal Releases R versions

Daily download trend is not available in this view yet.

Compare downloads with other packages →

Also on12 autocran

Dependencies

Declared dependencies

8 external dependencies (excludes base and recommended)

Depends (5)

R >= 3.3.0drc gdata kyotil gWidgets2

Imports (0)

none

LinkingTo (0)

none

Suggests (5)

knitr RUnit rjagsnlmeR.rsp

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

–indirect (not tracked)

Nothing depends on this yet.

Code & Tests

Code Composition

R 3,212 (77%)Rd 938 (23%)Other 4 (0%)

Code characteristics

Object systems

S312

Cyclomatic complexity: 3.0 median / 90 max
Test cases: 3 / 0.02 per code line

Test coverage

Line coverage

–

Expression

–

Tests / Examples

–

Functions

72 51 exported

Complexity

6.7 avg / 90 max

Call network

72 nodes / 67 edges

Test coverage has not been measured for this package yet; nodes fall back to a neutral fill.

Call graph

Open call graph →

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Lowest coverage

Per-function coverage is not measured for this package yet.

Datasets

Bundled datasets · 2

Name	Class	Rows × Cols	Also ships in
dat.QIL3	data.frame	120 × 13	–
hier.model.ex.2	data.frame	120 × 8	–

People & History

People (3)

Other (3)

Youyi Fong

Contributor

Krisztian Sebestyen

Contributor

Xuesong Yu

Contributor · added in 14.10-31

Package Timeline

18 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.2.0 released · 2022-04-22
archivedRemoved from CRAN
2021-10-05
check problems were not corrected in time
2021.9-12
2021-09-13 · diff ↗
R
R 4.1.0 released · 2021-05-18
2020.9-10
2020-09-11 · diff ↗
2020.5-21
2020-05-21 · diff ↗
2020.5-1
2020-05-02 · diff ↗
R
R 4.0.0 released · 2020-04-24
R
R 3.6.0 released · 2019-04-26
2018.8-20
2018-08-20 · diff ↗
R
R 3.5.0 released · 2018-04-23
2017.12-3
2017-12-03 · diff ↗
R
R 3.4.0 released · 2017-04-21
2016.7-31
2016-07-31 · diff ↗
2016.7-26
2016-07-27 · diff ↗
R
R 3.3.0 released · 2016-05-03

Show 13 earlier events

R
R 3.2.0 released · 2015-04-16
2015.3-3
2015-03-04 · diff ↗
R
R 3.1.0 released · 2014-04-10
14.11-8
2013-12-01 · diff ↗
14.10-31
2013-12-01 · diff ↗
13.12-01
2013-12-01 · diff ↗
0.3-4
2013-07-16 · diff ↗
0.3-3
2013-07-16 · diff ↗
0.3-2
2013-07-12 · diff ↗
0.3-1
2013-07-12 · diff ↗
0.2-1
2013-05-16 · diff ↗
0.1-1
2013-05-06
R
R 3.0.0 released · 2013-04-03

Package metadata

Total releases: 18
License: GPL (>= 2) OSI
Minimum R: ≥ 3.3.0
Bundled data: 3.6 KB / 4 files
Download size: not tracked yet
Installed size: not tracked yet
With dependencies: not tracked yet

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