R Observatory: Metrics for mxfda version 0.2.2-1

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

mxfda

0.2.2-1

A Functional Data Analysis Package for Spatial Single Cell Data

0packages depend

3.4Kdownloads / year

36.8%test coverage

13/13checks pass

Overview

About

Maintained by Alex SoupirFirst published 2024-05-083 releasesCRAN page ↗GitHub ↗

Methods and tools for deriving spatial summary functions from single-cell imaging data and performing functional data analyses. Functions can be applied to other single-cell technologies such as spatial transcriptomics. Functional regression and functional principal component analysis methods are in the 'refund' package https://cran.r-project.org/package=refund while calculation of the spatial summary functions are from the 'spatstat' package https://spatstat.org/.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("mxfda", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("julia-wrobel/mxfda")

Development version from julia-wrobel/mxfda. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-mxfda

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-mxfda

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-mxfda

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 8.1 min · r-oldrel-windows-x86_64

Code health

Yes

Tests · ratio 0.15

36.8%

Coverage · measured lines

97%

Documentation · exports

16

Dependencies · direct

Check history

OK2026-08-05
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-08-01
12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-06-09
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-06-08
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 111 wordsVignettesYes · dynamicpkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: 94%
Return-value docs: 100%
References docs: 15%

Downloads

3.4K

CRAN downloads in the past year

Rank #13,763 · ~9/day · ~286/mo

Releases R versions

Daily download trend is not available in this view yet.

21730 days

74090 days

3.4K1 year

Compare downloads with other packages →

Also on163 r2u18 autocran

Repository

GitHub ↗ julia-wrobel/mxfda

1Stars

1Forks

2Open issues

0Open PRs

4Releases

281Commits

3Contributors

281 commits · Last activity 2026-02-16

Stars over time

2023-12-15 · 12026-07-07 · 1

Repository practices

Upstream repositoryBeta

3 development-tooling and community-health practices detected across 3 families in the upstream repository

Checks run against github.com/julia-wrobel/mxfda on 2026-08-16.

Continuous integration (1)

GitHub Actions

Reproducibility and dev environment (1)

data-raw/

Lint, format, editor (1)

RStudio project

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

24 external dependencies (excludes base and recommended)

Depends (1)

R >= 2.10

Imports (16)

magrittr rlang tidyr purrr dplyr ggplot2 lifecyclemethodsstatsrefund reshape2mgcvspatstat.geom spatstat.explore SpatEntropy SimDesign

LinkingTo (0)

none

Suggests (12)

knitr rmarkdown testthat tidyversesurvivalggpubr spatialTIME tibble broom refund.shiny Seurat SeuratObject

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

Datasets

People & History

People (2)

Maintainer (1)

Alex Soupir

Author, Maintainer

Authors (2)

Alex Soupir

Author, Maintainer

Julia Wrobel

Author

Package Timeline

3 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
0.2.2-1Latest
2025-02-19 · current release · diff ↗
0.2.2
2024-10-07 · diff ↗
0.2.1
2024-05-08
R
R 4.4.0 released · 2024-04-24

Package metadata

First published: 2024-05-08
Total releases: 3 / 2 yrs
License: MIT + file LICENSE OSI
Minimum R: ≥ 2.10
Bundled data: 2.1 MB / 3 files
Download size: 2.8 MB
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("mxfda")

Format

Soupir, A., & Wrobel, J. (2025). mxfda: A Functional Data Analysis Package for Spatial Single Cell Data (Version 0.2.2-1) [Computer software]. https://doi.org/10.32614/CRAN.package.mxfda

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for mxfda version 0.2.2-1 [Data set]. HJJB, LLC. Data release v2026-08-18. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-18, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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