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mstherm

Analyze MS/MS Protein Melting Data

v0.4.7 · Apr 27, 2017 · GPL-3

Description

Software to aid in modeling and analyzing mass-spectrometry-based proteome melting data. Quantitative data is imported and normalized and thermal behavior is modeled at the protein level. Methods exist for normalization, modeling, visualization, and export of results. For a general introduction to MS-based thermal profiling, see Savitski et al. (2014) <doi:10.1126/science.1255784>.

Downloads

CRAN

266

Last 30 days

18323rd

566

Last 90 days

2.2K

Last year

Trend: +107.8% (30d vs prior 30d)

r2u CRAN

0

Last 30 days

23

Last 90 days

93

Last year

Trend: -100% (30d vs prior 30d)

autoCRAN

1

Last 7 days

15

Last 30 days

0

All-time

autoCRAN-only: this name is served only by autoCRAN, so the count is exact.

CRAN Check Status

13 OK
Show all 13 flavors
Flavor Status
r-devel-linux-x86_64-debian-clang OK
r-devel-linux-x86_64-debian-gcc OK
r-devel-linux-x86_64-fedora-clang OK
r-devel-linux-x86_64-fedora-gcc OK
r-devel-windows-x86_64 OK
r-oldrel-macos-arm64 OK
r-oldrel-macos-x86_64 OK
r-oldrel-windows-x86_64 OK
r-patched-linux-x86_64 OK
r-release-linux-x86_64 OK
r-release-macos-arm64 OK
r-release-macos-x86_64 OK
r-release-windows-x86_64 OK

Check History

OK 14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026

Code

Structure

Lines of code

2,625

Files

42

Compiled share

0%

Has compiled src

No

Language breakdown

R 1,633 (62.2%)Tests 141 (5.4%)Docs 590 (22.5%)Vignettes 261 (9.9%)

API

Exported functions

7

Internal functions

23

Recent export changes

v0.4.7+7 MSThermExperiment, model_experiment, model_protein +4 more

Testing & CI

Has tests

Yes

Test-to-code ratio

0.09

testthat edition

CI present

No

CI type

[]

PR gated

No

Docs

Return-value doc rate

100%

\dontrun example ratio

0%

Roxygen coverage

100%

Has pkgdown

No

NEWS present

Yes

Health & Security signals

Informational signals; not verdicts.

on.exit coverage

0%

Unsafe pattern score

0

Dep constraint coverage

0%

Secret pattern count

0

Bundled 3rd-party code

2 items

Portability & License

Min R version

System requirements

C++ standard

License

GPL-3

License flags

SPDX valid, OSI approved

History

Versions

1

First release

2017-04-27

Latest release

2017-04-27

Avg cadence

Cold removal rate

Dep drift

0

Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/cran-code-metrics.

Dependency Network

Dependencies Reverse dependencies foreach doParallel nls2 RColorBrewer plotrix mstherm

Version History

1 tracked
new 0.4.7 Mar 10, 2026

R Observatory began tracking this package on Mar 10, 2026; it first appeared on CRAN Apr 27, 2017. Releases before tracking aren’t shown.