R Observatory: Metrics for mpwR version 0.1.5.1

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

mpwR

0.1.5.1

Standardized Comparison of Workflows in Mass Spectrometry-Based Bottom-Up Proteomics

0packages depend

3.2Kdownloads / year

69.8%test coverage

13/13checks pass

Overview

About

Maintained by Oliver KardellFirst published 2022-06-226 releasesCRAN page ↗

Useful functions to analyze proteomic workflows including number of identifications, data completeness, missed cleavages, quantitative and retention time precision etc. Various software outputs are supported such as 'ProteomeDiscoverer', 'Spectronaut', 'DIA-NN' and 'MaxQuant'.

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("mpwR", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-mpwr

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-mpwR

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-mpwR

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 3.9 min · r-oldrel-windows-x86_64

Code health

Yes

Tests · ratio 0.87

69.8%

Coverage · measured lines

100%

Documentation · exports

14

Dependencies · direct

Check history

OK2026-08-05
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-08-01
12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-06-09
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-06-08
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 422 wordsVignettesYes · dynamicpkgdown siteNoNEWSYes · 100% structuredCode of conductNoContributing guideNo

Examples that run: 82%
Documented parameters: 100%
Return-value docs: 100%
References docs: 0%

Downloads

3.2K

CRAN downloads in the past year

Rank #15,229 · ~9/day · ~263/mo

Releases R versions

Daily download trend is not available in this view yet.

19630 days

70190 days

3.2K1 year

Compare downloads with other packages →

Also on90 r2u29 autocran

Dependencies

Declared dependencies

17 external dependencies (excludes base and recommended)

Depends (0)

none

Imports (14)

comprehenr data.table dplyr flowTraceR forcats ggplot2 magrittr plotly purrrstatsstringr tibble tidyr UpSetR

LinkingTo (0)

none

Suggests (5)

flextable knitr rmarkdown testthatutils

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

People & History

People (1)

Maintainer (1)

Oliver Kardell

Author, Maintainer

Authors (1)

Oliver Kardell

Author, Maintainer

Package Timeline

6 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
0.1.5.1Latest
2025-05-13 · current release · diff ↗
unarchivedReturned to CRAN
2025-05-13
R
R 4.5.0 released · 2025-04-11
archivedRemoved from CRAN
2025-03-09
issues were not corrected in time
R
R 4.4.0 released · 2024-04-24
0.1.5
2023-11-14 · diff ↗
0.1.4
2023-05-05 · diff ↗
R
R 4.3.0 released · 2023-04-21
0.1.3
2023-03-16 · diff ↗
0.1.2
2023-02-12 · diff ↗
unarchivedReturned to CRAN
2023-02-12
archivedRemoved from CRAN
2022-12-19
issues were not corrected in time
0.1.0
2022-06-22
R
R 4.2.0 released · 2022-04-22

Package metadata

First published: 2022-06-22
Total releases: 6 / 4 yrs
License: MIT + file LICENSE OSI
Download size: 615 KB
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("mpwR")

Format

Kardell, O. (2025). mpwR: Standardized Comparison of Workflows in Mass Spectrometry-Based Bottom-Up Proteomics (Version 0.1.5.1) [Computer software]. https://doi.org/10.32614/CRAN.package.mpwR

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for mpwR version 0.1.5.1 [Data set]. HJJB, LLC. Data release v2026-08-23. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-23, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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