R Observatory: Metrics for motifr version 1.0.0

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

motifr

1.0.0Package record

Motif Analysis in Multi-Level Networks

0packages depend

2.8Kdownloads / year

0.0%test coverage

13/13flavors OK

Overview

About

Maintained by Mario AngstCRAN page ↗GitHub ↗Website ↗Issues ↗

Tools for motif analysis in multi-level networks. Multi-level networks combine multiple networks in one, e.g. social-ecological networks. Motifs are small configurations of nodes and edges (subgraphs) occurring in networks. 'motifr' can visualize multi-level networks, count multi-level network motifs and compare motif occurrences to baseline models. It also identifies contributions of existing or potential edges to motifs to find critical or missing edges. The package is in many parts an R wrapper for the excellent 'SESMotifAnalyser' 'Python' package written by Tim Seppelt.

Changes in 1.0.0

First release on CRAN

---

From NEWS.md in the release

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("motifr", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("marioangst/motifr")

Development version from marioangst/motifr. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-motifr

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-motifr

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-motifr

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

13OK

CRAN check page ↗

Slowest check: 2.9 min · r-devel-windows-x86_64

Status changes

OK13 OK2026-08-05
NOTE12 OK, 1 NOTE2026-08-01
OK13 OK2026-06-09
ERROR12 OK, 1 ERROR2026-06-08
OK14 OK2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 1.0.0

READMEYes · 1,300 wordsVignettesYes · 3 · staticNEWSYes · 100% structured · mentions 1.0.0Citation fileNoWebsiteYes · pkgdown

Help pages: 27
Examples that run: 33%8 run in a plain check · 16 never run
Exported functions with examples: 90%
Documented parameters: 99%
Return-value docs: 95%
Help pages citing references: 0%

Vignettes (3)

How these are measured

Downloads

2.8K

CRAN downloads in the past year

Rank #13,840 · ~8/day · ~229/mo

Releases R versions

Daily download trend is not available in this view yet.

36230 days

83190 days

2.8K1 year

Compare downloads with other packages →

Also on65 r2u9 autocran

How downloads are counted

Repository

marioangst/motifr ↗Account: marioangst

16Stars

2Forks

10Open issues

0Open PRs

3Releases

231Commits

4Commit identities

231 commits · Last activity 2021-05-24 · 0% stars, 30d · Discussions: 1 post

Responsiveness

How these are sampled

PRs merged (all time): 100%
Median days to close, 50 most recently updated closed issues: 24
Median days to close, 50 most recently updated closed PRs: 1

Stars over time

2025-03-25 · 162026-07-07 · 16

How these are measured

PracticesBeta

7 development-tooling and community-health practices detected across 5 families in the upstream repository

Checks run against github.com/marioangst/motifr on 2026-10-11.

Continuous integration (1)

Travis CI (config file)

Docs source (3)

README.Rmdpkgdown

GitHub Pages site last deployed 2021-05-24

pkgdown site last built 2021-05-24

CRAN release process (1)

cran-comments.md

Lint, format, editor (1)

RStudio project

Show all practicesHide 1 practice

Git structural (1)

.gitattributes

How this is detected·Detection ruleset v3 (2026-09-26)

Dependencies

Declared dependencies

20 external dependencies (excludes base and recommended)

Installing motifr adds 59 packages (38 with compiled code, 51 MB of source tarballs). Heaviest: stringi 11 MB, ggplot2 6.0 MB, igraph 4.8 MB.

Depends (1)

R >= 3.5.0

Imports (14)

dplyr ggplot2 ggraph igraph intergraph network purrr RColorBrewer reshape2 reticulate rlang scales tibble tidygraph

LinkingTo (0)

none

Suggests (6)

ergm knitr pkgdown rmarkdown shiny testthat

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

How these are counted

Code & Tests

Datasets

People & History

People (2)

Mario Angst

Author, Maintainer since 1.0.0 (2020)

Tim Seppelt

Author

Releases (1)

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
1.0.0Latest
record
2020-12-10 · current release
R
R 4.0.0 released · 2020-04-24

Package metadata

First published: 2020-12-10
Total releases: 1 / 6 yrs
License: MIT + file LICENSE OSI
Minimum R: ≥ 3.5.0
Bundled data: 20 KB / 5 files
Download size: 753 KB

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("motifr")

Format

Angst, M., & Seppelt, T. (2020). motifr: Motif Analysis in Multi-Level Networks (Version 1.0.0) [Computer software]. https://doi.org/10.32614/CRAN.package.motifr

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for motifr version 1.0.0 [Data set]. HJJB, LLC. Data release v2026-10-18. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-18, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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