R Observatory: Metrics for monographaR version 1.3.1

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

monographaR

1.3.1Package record

Taxonomic Monographs Tools

0packages depend

2.9Kdownloads / year

–test coverage

11/13flavors OK

Overview

About

Maintained by Marcelo ReginatoCRAN page ↗

Contains functions intended to facilitate the production of plant taxonomic monographs. The package includes functions to convert tables into taxonomic descriptions, lists of collectors, examined specimens, identification keys (dichotomous and interactive), and can generate a monograph skeleton. Additionally, wrapper functions to batch the production of phenology histograms and distributional and diversity maps are also available.

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("monographaR", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-monographar

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-monographaR

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-monographaR

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

2NOTE11OK

Check messages

NOTECRAN incoming feasibilityr-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Maintainer: ‘Marcelo Reginato <reginatobio@yahoo.com.br>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Marcelo",
                    family = "Reginato",
                    role = c("aut", "cre"),
                    email = "reginatobio@yahoo.com.br")
as necessary.

CRAN check page ↗

Slowest check: 7.8 min · r-oldrel-windows-x86_64

Status changes

NOTE11 OK, 2 NOTENow
NOTE12 OK, 2 NOTE2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 1.3.1

READMENoVignettesYes · 2 · dynamicNEWSNoCitation fileYes · cites a publicationWebsitenot declared in DESCRIPTION

Help pages: 19includes a package overview page
Examples that run: 100%17 run in a plain check (1 of them under a condition)
Exported functions with examples: 100%
Documented parameters: 98%
Return-value docs: 100%
Help pages citing references: 5%

Vignettes (2)

A quick guide to monographaR HTML
Identification keys HTML

How these are measured

Downloads

2.9K

CRAN downloads in the past year

Rank #15,046 · ~8/day · ~244/mo

Releases R versions

Daily download trend is not available in this view yet.

33030 days

80490 days

2.9K1 year

Compare downloads with other packages →

Also on69 r2u4 autocran

How downloads are counted

Dependencies

Declared dependencies

13 external dependencies (excludes base and recommended)

Installing monographaR adds 60 packages (38 with compiled code, 58 MB of source tarballs). Heaviest: sf 9.3 MB, bslib 5.6 MB, sp 4.3 MB.

Depends (1)

R >= 4.0.0

Imports (13)

circular png raster rmarkdown rnaturalearthrpartsf shiny shinydashboard shinythemes shinyWidgets sp terra

LinkingTo (0)

none

Suggests (1)

knitr

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

How these are counted

Code & Tests

Datasets

People & History

People (from the free-text Author field) (1)

Marcelo Reginato

Maintainer since 1.0 (2015)

Releases (6)

Pick two releases to compare their code metrics.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
1.3.1Latest
record
2024-02-08 · current release · diff ↗ ·
added 3 exports
codeGap, codeMatrix, dichoKey.app
unarchivedReturned to CRAN
2024-01-10
1.3.0
record
2024-01-10 · diff ↗ ·
added 4 exports
dataKey, dichoKey, interactiveKey, interactiveKeyLabels
archivedRemoved from CRAN
2023-10-16
requires archived package 'maptools'
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
1.2.1
record
2020-10-11 · diff ↗
R
R 4.0.0 released · 2020-04-24
R
R 3.6.0 released · 2019-04-26
R
R 3.5.0 released · 2018-04-23
R
R 3.4.0 released · 2017-04-21
1.2.0
record
2016-07-13 · diff ↗ ·
added 1 export
mapPhenology

Show 4 earlier eventsHide 4 earlier events

R
R 3.3.0 released · 2016-05-03
1.01
record
2015-11-11 · diff ↗ ·
removed 1 export
pattern:^[[:alpha:]]+

added 8 exports
buildMonograph, collectorList, examinedSpecimens, mapBatch, mapDiversity, mapTable, phenoHist, tableToDescription
1.0
record
2015-09-07
R
R 3.2.0 released · 2015-04-16

Package metadata

First published: 2015-09-07
Total releases: 6 / 11 yrs
License: GPL (>= 2) OSI
Minimum R: ≥ 4.0.0
Bundled data: 48 KB / 2 files
Download size: 903 KB

Cite

Cite this package

Run in R for the authors' entry:

citation("monographaR")

The package provides a citation file, so citation() returns the authors' own entry.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for monographaR version 1.3.1 [Data set]. HJJB, LLC. Data release v2026-10-22. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-22, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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