R Observatory: Metrics for monitOS version 0.1.6

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

monitOS

0.1.6Package record

Monitoring Overall Survival in Pivotal Trials in Indolent Cancers

0packages depend

2.5Kdownloads / year

100.0%test coverage

13/13flavors OK

Overview

About

Maintained by Thibaud CorollerCRAN page ↗GitHub ↗Website ↗Issues ↗

These guidelines are meant to provide a pragmatic, yet rigorous, help to drug developers and decision makers, since they are shaped by three fundamental ingredients: the clinically determined margin of detriment on OS that is unacceptably high (delta null); the benefit on OS that is plausible given the mechanism of action of the novel intervention (delta alt); and the quantity of information (i.e. survival events) it is feasible to accrue given the clinical and drug development setting. The proposed guidelines facilitate transparent discussions between stakeholders focusing on the risks of erroneous decisions and what might be an acceptable trade-off between power and the false positive error rate.

Changes in 0.1.6

Changed Licence to MIT.
Added spell checking to package.
Added github issues link BugReport and website link to URL in `Description.
Fix import issue with shiny dependency.
Fix bug returning inf values in Shiny app.
Added new badges to packages

From NEWS.md in the release

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("monitOS", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("Novartis/monitOS")

Development version from Novartis/monitOS. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-monitos

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-monitOS

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-monitOS

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

13OK

CRAN check page ↗

Slowest check: 1.1 min · r-oldrel-windows-x86_64

Status changes

OK13 OK2026-08-05
NOTE12 OK, 1 NOTE2026-08-01
OK13 OK2026-06-08
ERROR12 OK, 1 ERROR2026-06-07
OK14 OK2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 0.1.6

READMEYes · 281 wordsVignettesNoNEWSYes · 100% structured · mentions 0.1.6Citation fileNoWebsiteYes · pkgdown

Help pages: 8
Examples that run: 100%4 run in a plain check
Exported functions with examples: 67%
Documented parameters: 100%
Return-value docs: 100%
Help pages citing references: 0%

How these are measured

Downloads

2.5K

CRAN downloads in the past year

Rank #20,175 · ~7/day · ~205/mo

Releases R versions

Daily download trend is not available in this view yet.

21830 days

66490 days

2.5K1 year

Compare downloads with other packages →

Also on98 r2u6 autocran

How downloads are counted

Repository

novartis/monitos ↗Organization: Novartis

2Stars

1Forks

0Open issues

0Open PRs

2Releases

252Commits

6Commit identities

indolentmonitoringsurvival

252 commits · Last activity 2026-04-15 · 0% stars, 30d · Default branch at 0.2.0, ahead of CRAN 0.1.6 (checked 2026-10-25)

Responsiveness

How these are sampled

PRs merged (all time): 75%
Median days to close, 50 most recently updated closed issues: 56
Median days to close, 50 most recently updated closed PRs: 0

Stars over time

2025-04-29 · 12026-07-07 · 2

How these are measured

PracticesBeta

14 development-tooling and community-health practices detected across 7 families in the upstream repository

Checks run against github.com/novartis/monitos on 2026-10-25.

Continuous integration (3)

GitHub ActionsR CMD check workflowGitLab CI

The R CMD check workflow runs on Linux, macOS and Windows, and on R-devel

Docs source (3)

pkgdown

GitHub Pages site last deployed 2026-04-15 · The repository has a site deploy workflow

pkgdown site last built 2026-04-15

Coverage (1)

.covrignore

Reproducibility and dev environment (1)

renv

Show all practicesHide 3 practices

CRAN release process (2)

cran-comments.mdCRAN-SUBMISSION

Automation and maintenance (1)

pre-commit

Lint, format, editor (3)

lintrAirRStudio project

How this is detected·Detection ruleset v4 (2026-10-20)

AI coding toolsBeta

This repository shows signs of AI coding tools.

GitHub Copilotfirst seen 2026-03-27
Commits: at least 13 crediting it in the message
Claude Codefirst seen 2026-03-27
Named in .Rbuildignore: .claude, CLAUDE.md
Named in .gitignore: .claude, CLAUDE.md

Counts are commits, not lines of code. Commits by a tool's accounts count once across all of its accounts. Commits crediting it are the largest count among its credit lines, a minimum.How this is detected·Detection ruleset v4 (updated 2026-09-27)

Dependencies

Declared dependencies

7 external dependencies (excludes base and recommended)

Installing monitOS adds 31 packages (19 with compiled code, 26 MB of source tarballs). Heaviest: bslib 5.6 MB, promises 3.1 MB, sass 2.9 MB.

Depends (0)

none

Imports (4)

statsglue shiny shinydashboard

LinkingTo (0)

none

Suggests (4)

testthat knitr rmarkdown pkgdown

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

How these are counted

Code & Tests

People & History

People (11)

Thibaud Coroller

Author, Maintainer since 0.1.3 (2023)

Lisa Hampson

Author

Evanthia Koukouli

Author

Bharani Bharani-Dharan

Contributor

Contributor

Contributor

Contributor

Contributor

Contributor

Contributor

Copyright holder

Releases (4)

Pick two releases to compare their code metrics.

R
R 4.6.0 released · 2026-04-24
0.1.6Latest
record
2025-07-17 · current release · diff ↗ ·
added 4 exports
calc_posterior, calc_predictive, find_pos, meeting_probs
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
0.1.5
record
2024-03-21 · diff ↗
0.1.4
record
2024-03-05 · diff ↗
0.1.3
record
2023-10-31
R
R 4.3.0 released · 2023-04-21

Package metadata

First published: 2023-10-31
Total releases: 4 / 3 yrs
License: MIT + file LICENSE OSI · relicensed from GPL (>= 3) in 0.1.6
Download size: 138 KB

Appears in task views

Clinical Trial Design, Monitoring, Analysis and Reporting

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("monitOS")

Format

Coroller, T., Bharani-Dharan, B., Bretz, F., Chakravartty, A., Fleming, T., Hampson, L., Koukouli, E., Pharma AG, N., Wittes, J., Yateman, N., & Zuber, E. (2025). monitOS: Monitoring Overall Survival in Pivotal Trials in Indolent Cancers (Version 0.1.6) [Computer software]. https://doi.org/10.32614/CRAN.package.monitOS

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for monitOS version 0.1.6 [Data set]. HJJB, LLC. Data release v2026-10-26. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-26, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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