This package was removed from CRAN on 2021-10-18. Its history is shown below.

Reason: check problems were not corrected in time

Details below reflect version 0.9.23, its last release before removal.

miraculix

0.9.23

Algebraic and Statistical Functions for Genetics

0packages depend

–downloads / year

–test coverage

–checks pass

Overview

About

Maintained by Martin Schlather3 releasesCRAN page ↗

This is a collection of fast tools for application in quantitative genetics. For instance, the SNP matrix can be stored in a minimum of memory and the calculation of the genomic relationship matrix is based on a rapid algorithm. It also contains the window scanning approach by Kabluchko and Spodarev (2009), doi:10.1239/aap/1240319575 to detect anomalous genomic areas doi:10.1186/s12864-018-5009-y. Furthermore, the package is used in the Modular Breeding Program Simulator (MoBPS, https://github.com/tpook92/MoBPS, https://www.mobps.de/). The tools are based on SIMD (Single Instruction Multiple Data, https://en.wikipedia.org/wiki/SIMD) and OMP (Open Multi-Processing, https://de.wikipedia.org/wiki/OpenMP).

Install

R (source archive)openSUSE (OBS)

url <- "https://cran.r-project.org/src/contrib/Archive/miraculix/miraculix_0.9.23.tar.gz"
pkgFile <- "miraculix_0.9.23.tar.gz"
download.file(url, pkgFile)
install.packages(pkgFile, type = "source", repos = NULL)

This package is no longer on CRAN, so install.packages() cannot fetch it by name. This downloads the last archived source (0.9.23) and builds it locally. Install its dependencies first, and note that building from source needs the usual compiler toolchain.

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-miraculix

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

CRAN check results are not tracked yet.

Code health

None

Tests · ratio 0.00

not tracked

Coverage

100%

Documentation · exports

Dependencies · direct

Documentation

READMENoVignettesNopkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: 86%
Return-value docs: 100%
References docs: 12%

Downloads

miraculix Releases R versions

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Also on9 autocran

Dependencies

Declared dependencies

2 external dependencies (excludes base and recommended)

Depends (2)

R >= 3.0RandomFieldsUtils

Imports (2)

methodsgraphics

LinkingTo (1)

RandomFieldsUtils

Suggests (0)

none

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

–indirect (not tracked)

Nothing depends on this yet.

Code & Tests

Code Composition

C++ 7,592 (53%)C 3,331 (23%)R 1,700 (12%)Rd 1,697 (12%)

Code characteristics

Object systems

S314S4 method4

Cyclomatic complexity: 2.0 median / 58 max

Test coverage

Line coverage

–

Expression

–

Tests / Examples

–

Functions

391 24 exported

Complexity

6 avg / 58 max

Call network

391 nodes / 401 edges

Test coverage has not been measured for this package yet; nodes fall back to a neutral fill.

Call graph

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Lowest coverage

Per-function coverage is not measured for this package yet.

People & History

People (4)

Maintainer (2)

Martin Schlather

Author, Maintainer

Malena Erbe

Author, Maintainer

Authors (3)

Martin Schlather

Author, Maintainer

Malena Erbe

Author, Maintainer

Florian Skene

Author

Other (1)

Alexander Freudenberg

Contractor

Package Timeline

3 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.2.0 released · 2022-04-22
archivedRemoved from CRAN
2021-10-18
check problems were not corrected in time
0.9.23
2021-09-22 · diff ↗
R
R 4.1.0 released · 2021-05-18
R
R 4.0.0 released · 2020-04-24
0.9.20
2020-04-17 · diff ↗
unarchivedReturned to CRAN
2020-04-17
archivedRemoved from CRAN
2019-10-05
installation issues were not corrected in time
0.9.4
2019-09-12
R
R 3.6.0 released · 2019-04-26

Package metadata

Total releases: 3
License: GPL (>= 3) OSI
Minimum R: ≥ 3.0
Download size: not tracked yet
Installed size: not tracked yet
With dependencies: not tracked yet

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