R Observatory: Metrics for minval version 0.8-2

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

This package was removed from CRAN on 2022-12-05. Its history is shown below.

Reason: issues were not corrected in time

Details below reflect version 0.8-2, its last release before removal.

minval

0.8-2

MINimal VALidation for Stoichiometric Reactions

0packages depend

–downloads / year

–test coverage

–checks pass

Overview

About

Maintained by Daniel Osorio11 releasesCRAN page ↗GitHub ↗

For a given set of stoichiometric reactions, this package evaluates the mass and charge balance, extracts all reactants, products, orphan metabolites, metabolite names and compartments. Also are included some options to characterize and write models in TSV and SBML formats.

Install

R (source archive)pak (dev)Ubuntu (r2u)openSUSE (OBS)

url <- "https://cran.r-project.org/src/contrib/Archive/minval/minval_0.8-2.tar.gz"
pkgFile <- "minval_0.8-2.tar.gz"
download.file(url, pkgFile)
install.packages(pkgFile, type = "source", repos = NULL)

This package is no longer on CRAN, so install.packages() cannot fetch it by name. This downloads the last archived source (0.8-2) and builds it locally. Install its dependencies first, and note that building from source needs the usual compiler toolchain.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("gibbslab/minval")

Development version from gibbslab/minval. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-minval

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-minval

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

CRAN check results are not tracked yet.

Code health

Yes

Tests · ratio 0.13

not tracked

Coverage

100%

Documentation · exports

1

Dependencies · direct

Documentation

READMEYes · 353 wordsVignettesYes · dynamicpkgdown siteNoNEWSYes · 100% structuredCode of conductNoContributing guideNo

Examples that run: 90%
Documented parameters: 100%
Return-value docs: 92%
References docs: 0%

Downloads

Releases R versions

Daily download trend is not available in this view yet.

Compare downloads with other packages →

Also on59 r2u15 autocran

Dependencies

Declared dependencies

5 external dependencies (excludes base and recommended)

Depends (1)

R >= 2.10

Imports (1)

methods

LinkingTo (0)

none

Suggests (5)

testthat knitr rmarkdown sybil glpkAPI

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

–indirect (not tracked)

Nothing depends on this yet.

Code & Tests

People & History

People (3)

Maintainer (1)

Daniel Osorio

Author, Maintainer

Authors (3)

Daniel Osorio

Author, Maintainer

Janneth Gonzalez

Author, Thesis advisor

Andres Pinzon

Author, Thesis advisor · added in 0.6-1

Listed in earlier versions (13)

Andres Pinzon-Velasco

no longer listed · 0.1 to 0.4

Andres Pinzon-Velasco.

no longer listed · 0.5

"Gonzalez"

no longer listed · 0.6

"Osorio"

no longer listed · 0.6

"Pinzon"

no longer listed · 0.6

"cre"))

no longer listed · 0.6

"ths"))

no longer listed · 0.6

"ths")))

no longer listed · 0.6

Package Timeline

11 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.3.0 released · 2023-04-21
archivedRemoved from CRAN
2022-12-05
issues were not corrected in time
0.8-2
2022-05-09 · diff ↗
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
R
R 4.0.0 released · 2020-04-24
R
R 3.6.0 released · 2019-04-26
R
R 3.5.0 released · 2018-04-23
0.8-1
2018-04-12 · diff ↗
0.8
2017-06-05 · diff ↗
0.7
2017-05-23 · diff ↗
R
R 3.4.0 released · 2017-04-21
0.6-1
2017-04-02 · diff ↗
0.6
2017-04-02 · diff ↗
0.5
2016-10-04 · diff ↗
0.4
2016-05-18 · diff ↗

Show 5 earlier events

R
R 3.3.0 released · 2016-05-03
0.3
2016-04-27 · diff ↗
0.2
2016-03-14 · diff ↗
0.1
2016-02-16
R
R 3.2.0 released · 2015-04-16

Package metadata

Total releases: 11
License: GPL (>= 2) OSI
Minimum R: ≥ 2.10
Download size: not tracked yet
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("minval")

Format

Osorio, D., Gonzalez, J., & Pinzon, A. (n.d.). minval: MINimal VALidation for Stoichiometric Reactions (Version 0.8-2) [Computer software]. Retrieved August 13, 2026, from https://CRAN.R-project.org/package=minval

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for minval version 0.8-2 [Data set]. HJJB, LLC. Data release v2026-08-11. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-11, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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