R Observatory: Metrics for mintyr version 0.1.3

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

mintyr

0.1.3

High-Performance Phenotypic Data Pipelines for Breeding

0packages depend

3.3Kdownloads / year

–test coverage

13/13checks pass

Overview

About

Maintained by Guo MengFirst published 2024-12-134 releasesCRAN page ↗GitHub ↗

A streamlined toolkit specifically designed for genomic selection and quantitative genetics in animal breeding. It provides high-performance data manipulation backed by 'data.table', focusing on multi-breed and multi-trait nested grouping operations. Features include zero-copy data importing, automated cross-validation splitting, and robust tools to generate and batch-export formatted phenotypic files required by various breeding software (e.g., 'ASReml-R', 'HIBLUP', 'DMU'), heavily optimizing iterative variance component analysis and large-scale evaluation pipelines.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("mintyr", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("tony2015116/mintyr")

Development version from tony2015116/mintyr. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-mintyr

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-mintyr

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-mintyr

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 1.9 min · r-oldrel-windows-x86_64

Code health

None

Tests · ratio 0.00

not tracked

Coverage

100%

Documentation · exports

7

Dependencies · direct

Check history

OK2026-08-05
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-08-01
12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-06-09
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-06-07
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 522 wordsVignettesYes · dynamicpkgdown siteNoNEWSYes · 100% structuredCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: 94%
Return-value docs: 100%
References docs: 0%

Downloads

3.3K

CRAN downloads in the past year

Rank #13,556 · ~9/day · ~271/mo

Releases R versions

Daily download trend is not available in this view yet.

19730 days

75190 days

3.3K1 year

Compare downloads with other packages →

Also on119 r2u

Repository

GitHub ↗ tony2015116/mintyr

0Stars

0Forks

1Open issues

0Open PRs

4Releases

51Commits

1Contributors

genomic-selectionasreml-r

51 commits · Last activity 2026-06-30

Releases over time

2024-12-11 · 12026-07-07 · 4

Repository practices

Upstream repositoryBeta

4 development-tooling and community-health practices detected across 3 families in the upstream repository

Checks run against github.com/tony2015116/mintyr on 2026-08-16.

Continuous integration (1)

GitHub Actions

CRAN release process (2)

cran-comments.mdCRAN-SUBMISSION

Lint, format, editor (1)

RStudio project

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

6 external dependencies (excludes base and recommended)

Depends (1)

R >= 4.1.0

Imports (7)

data.tableparallelreadxl rsamplestatsutilswritexl

LinkingTo (0)

none

Suggests (2)

knitr rmarkdown

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

People & History

People (2)

Maintainer (1)

Guo Meng

Author, Maintainer

Authors (1)

Guo Meng

Author, Maintainer

Copyright holders (1)

Guo Meng

Copyright holder

Listed in earlier versions (1)

Guo Meng tony2015116@163.com

no longer listed · 0.1.0 to 0.1.3

Package Timeline

4 releases. Pick two to compare their code metrics. R releases are shown for context.

0.1.3Latest
2026-06-20 · current release · diff ↗
R
R 4.6.0 released · 2026-04-24
0.1.2
2025-10-25 · diff ↗
0.1.1
2025-10-13 · diff ↗
R
R 4.5.0 released · 2025-04-11
0.1.0
2024-12-13
R
R 4.4.0 released · 2024-04-24

Package metadata

First published: 2024-12-13
Total releases: 4 / 2 yrs
License: MIT + file LICENSE OSI
Minimum R: ≥ 4.1.0
Download size: 480 KB
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("mintyr")

Format

Guo Meng, & Guo Meng. (2026). mintyr: High-Performance Phenotypic Data Pipelines for Breeding (Version 0.1.3) [Computer software]. https://doi.org/10.32614/CRAN.package.mintyr

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for mintyr version 0.1.3 [Data set]. HJJB, LLC. Data release v2026-08-16. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-16, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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