R Observatory: Metrics for mappestRisk version 0.1.2

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

mappestRisk

0.1.2Package record

Create Maps Forecasting Risk of Pest Occurrence

0packages depend

2.1Kdownloads / year

88.9%test coverage

13/13flavors OK

Overview

About

Maintained by Darío San-Segundo MolinaCRAN page ↗GitHub ↗Website ↗Issues ↗

There are three different modules: (1) model fitting and selection using a set of the most commonly used equations describing developmental responses to temperature helped by already existing R packages ('rTPC') and nonlinear regression model functions from 'nls.multstart' (Padfield et al. 2021, doi:10.1111/2041-210X.13585), with visualization of model predictions to guide ecological criteria for model selection; (2) calculation of suitability thermal limits, which consist on a temperature interval delimiting the optimal performance zone or suitability; and (3) climatic data extraction and visualization inspired on previous research (Taylor et al. 2019, doi:10.1111/1365-2664.13455), with either exportable rasters, static map images or html, interactive maps.

Changes in 0.1.2

Fix issue with modification of graphical parameters in map_risk.

From NEWS.md in the release

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("mappestRisk", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("EcologyR/mappestRisk")

Development version from EcologyR/mappestRisk. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-mappestrisk

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-mappestRisk

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-mappestRisk

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

13OK

CRAN check page ↗

Slowest check: 2.5 min · r-oldrel-windows-x86_64

Status changes

OK13 OK2026-08-05
NOTE12 OK, 1 NOTE2026-08-01
OK14 OK2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 0.1.2

READMEYes · 1,048 wordsVignettesNoNEWSYes · 100% structured · mentions 0.1.2Citation fileYes · software entry onlyWebsiteYes · pkgdown

The repository also keeps web-only articles.

Help pages: 11 (1 internal)includes a package overview page
Examples that run: 100%7 run in a plain check (4 of them under a condition)
Exported functions with examples: 100%
Documented parameters: 100%
Return-value docs: 100%
Help pages citing references: 45%

How these are measured

Downloads

2.1K

CRAN downloads in the past year

Rank #22,096 · ~6/day · ~172/mo

Releases R versions

Daily download trend is not available in this view yet.

21730 days

59990 days

2.1K1 year

Compare downloads with other packages →

Also on66 r2u3 autocran

How downloads are counted

Repository

ecologyr/mappestrisk ↗Organization: EcologyR

3Stars

0Forks

4Open issues

0Open PRs

1Releases

484Commits

7Commit identities

License file reads as GPL-3.0 · 484 commits · Last activity 2026-10-07 · 0% stars, 30d

Responsiveness

How these are sampled

PRs merged (all time): 100%
Median days to close, 50 most recently updated closed issues: 34
Median days to close, 50 most recently updated closed PRs: 0

Stars over time

2025-03-11 · 22026-07-07 · 3

How these are measured

PracticesBeta

14 development-tooling and community-health practices detected across 9 families in the upstream repository

Checks run against github.com/ecologyr/mappestrisk on 2026-10-18.

Continuous integration (2)

GitHub ActionsR CMD check workflow

The R CMD check workflow runs on Linux, macOS and Windows, and on R-devel

Governance and community (2)

Code of conductContributing guide

Docs source (4)

README.Rmdpkgdown

GitHub Pages site last deployed 2026-10-07 · The repository has a site deploy workflow

pkgdown site last built 2026-10-07

Coverage (1)

Coverage reporting (Codecov)

Show all practicesHide 5 practices

Reproducibility and dev environment (1)

data-raw/

CRAN release process (1)

cran-comments.md

Research and citation (1)

CITATION.cff

Automation and maintenance (1)

Dependabot

Lint, format, editor (1)

RStudio project

How this is detected·Detection ruleset v3 (2026-09-26)

Dependencies

Declared dependencies

13 external dependencies (excludes base and recommended)

Installing mappestRisk adds 42 packages (20 with compiled code, 39 MB of source tarballs). Heaviest: stringi 11 MB, ggplot2 6.0 MB, rTPC 3.6 MB.

Depends (1)

R >= 4.3.0

Imports (10)

dplyr geodata ggplot2 khroma nls.multstart progress purrr rTPC terra tidyr

LinkingTo (0)

none

Suggests (3)

covr leaflet testthat

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

How these are counted

Code & Tests

Datasets

People & History

People (4)

Darío San-Segundo Molina

A. Márcia Barbosa

Author, Copyright holder

Antonio Jesús Pérez-Luque

Author, Copyright holder

Francisco Rodríguez-Sánchez

Author, Copyright holder

Releases (1)

R
R 4.6.0 released · 2026-04-24
0.1.2Latest
record
2025-11-19 · current release
R
R 4.5.0 released · 2025-04-11

Package metadata

First published: 2025-11-19
Total releases: 1 / 1 yrs
License: GPL (>= 3) OSI
Minimum R: ≥ 4.3.0
Bundled data: 2.9 KB / 3 files
Download size: 285 KB

Cite

Cite this package

Run in R for the authors' entry:

citation("mappestRisk")

The package provides a citation file, so citation() returns the authors' own entry.

The repository also keeps a CITATION.cff.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for mappestRisk version 0.1.2 [Data set]. HJJB, LLC. Data release v2026-10-22. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-22, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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