R Observatory: Metrics for mantis version 1.0.2

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

mantis

1.0.2Package record

Multiple Time Series Scanner

0packages depend

6Kdownloads / year

95.0%test coverage

13/13flavors OK

Overview

About

Maintained by T. Phuong QuanCRAN page ↗GitHub ↗Website ↗Issues ↗Declared funder: National Institute for Health Research (NIHR)

Generate interactive html reports that enable quick visual review of multiple related time series stored in a data frame. For static datasets, this can help to identify any temporal artefacts that may affect the validity of subsequent analyses. For live data feeds, regularly scheduled reports can help to pro-actively identify data feed problems or unexpected trends that may require action. The reports are self-contained and shareable without a web server.

Changes in 1.0.2

Bug fixes and minor improvements

Fixed case_when() warnings introduced in dplyr v1.2.0

From NEWS.md in the release

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("mantis", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("ropensci/mantis")

Development version from ropensci/mantis. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-mantis

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-mantis

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-mantis

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

13OK

CRAN check page ↗

Slowest check: 3.7 min · r-oldrel-macos-x86_64

Status changes

OK13 OK2026-08-05
NOTE12 OK, 1 NOTE2026-08-01
OK14 OK2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 1.0.2

READMEYes · 499 wordsVignettesYes · 3 · dynamicNEWSYes · 100% structured · mentions 1.0.2Citation fileNoWebsiteYes · pkgdown

Help pages: 15 (1 internal)includes a package overview page
Examples that run: 67%8 run in a plain check · 1 only when donttest examples are enabled (R CMD check --as-cran) · 3 never run
Exported functions with examples: 100%
Documented parameters: 97%
Return-value docs: 100%
Help pages citing references: 0%

Vignettes (3)

How these are measured

Downloads

6K

CRAN downloads in the past year

Rank #9,380 · ~17/day · ~502/mo

Releases R versions

Daily download trend is not available in this view yet.

37830 days

1K90 days

6K1 year

Compare downloads with other packages →

Also on92 r2u7 autocran

How downloads are counted

Repository

ropensci/mantis ↗Organization: ropensci

4Stars

1Forks

14Open issues

0Open PRs

8Releases

235Commits

4Commit identities

License file reads as GPL-3.0 · 235 commits · Last activity 2026-07-30 · 0% stars, 30d · Default branch at 1.0.2.9000, ahead of CRAN 1.0.2 (checked 2026-10-18)

Responsiveness

How these are sampled

PRs merged (all time): 89%
Median days to close, 50 most recently updated closed issues: 34
Median days to close, 50 most recently updated closed PRs: 0

Stars over time

2025-06-26 · 12026-07-07 · 4

How these are measured

PracticesBeta

14 development-tooling and community-health practices detected across 7 families in the upstream repository

Checks run against github.com/ropensci/mantis on 2026-10-18.

Continuous integration (2)

GitHub ActionsR CMD check workflow

The R CMD check workflow runs on Linux, macOS and Windows, and on R-devel

Governance and community (2)

Code of conduct (inherited from ropensci)Contributing guide

Docs source (4)

README.Rmdpkgdown

GitHub Pages site last deployed 2026-07-30 · The repository has a site deploy workflow

pkgdown site last built 2026-03-26

Coverage (1)

Coverage reporting (Codecov)

Show all practicesHide 3 practices

Reproducibility and dev environment (2)

renvdata-raw/

Research and citation (1)

codemeta.json

Lint, format, editor (2)

AirRStudio project

How this is detected·Detection ruleset v3 (2026-09-26)

Dependencies

Declared dependencies

19 external dependencies (excludes base and recommended)

Installing mantis adds 58 packages (31 with compiled code, 49 MB of source tarballs). Heaviest: stringi 11 MB, ggplot2 6.0 MB, bslib 5.6 MB.

Depends (1)

R >= 4.1.0

Imports (12)

rmarkdown knitr reactable dplyr tidyr dygraphs xts ggplot2 scales purrr htmltools lubridate

LinkingTo (0)

none

Suggests (7)

covr testthat codemetar vdiffr shiny diffviewer withr

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

How these are counted

Code & Tests

Datasets

People & History

People (5)

T. Phuong Quan

Author, Maintainer since 0.4.2 (2025)

University of Oxford

Copyright holder

National Institute for Health Research (NIHR)

Funder

Rodrigo Pires

Reviewer · added in 1.0.0

Margaret Siple

Reviewer · added in 1.0.0

Listed in earlier versions (1)

T. Phuong

no longer listed · 0.4.2 to 1.0.2

Releases (5)

Pick two releases to compare their code metrics.

R
R 4.6.0 released · 2026-04-24
1.0.2Latest
record
2026-02-11 · current release · diff ↗
1.0.1
record
2026-01-13 · diff ↗
1.0.0
record
2025-10-27 · diff ↗
0.4.3
record
2025-08-01 · diff ↗ ·
added 3 exports
bespoke_rmd_alert_results, bespoke_rmd_initialise_widgets, bespoke_rmd_output
0.4.2
record
2025-07-28
R
R 4.5.0 released · 2025-04-11

Package metadata

First published: 2025-07-28
Total releases: 5 / 1 yrs
License: GPL (>= 3) OSI
Minimum R: ≥ 4.1.0
Bundled data: 15 KB / 2 files
Download size: 1.1 MB

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("mantis")

Format

Quan, T. P., National Institute for Health Research (NIHR), , Pires, R., Siple, M., & University of Oxford, . (2026). mantis: Multiple Time Series Scanner (Version 1.0.2) [Computer software]. https://doi.org/10.32614/CRAN.package.mantis

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for mantis version 1.0.2 [Data set]. HJJB, LLC. Data release v2026-10-22. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-22, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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