This package was removed from CRAN on 2023-09-18. Its history is shown below.

Reason: issues were not corrected despite reminders

Details below reflect version 1.0, its last release before removal.

lsplsGlm

1.0

Classification using LS-PLS for Logistic Regression

0packages depend

–downloads / year

–test coverage

–checks pass

Overview

About

Maintained by Bazzoli Caroline1 releasesCRAN page ↗

Fit logistic regression models using LS-PLS approaches to analyse both clinical and genomic data. (C. Bazzoli and S. Lambert-Lacroix. (2017) Classification using LS-PLS with logistic regression based on both clinical and gene expression variables https://hal.archives-ouvertes.fr/hal-01405101).

Install

R (source archive)Ubuntu (r2u)openSUSE (OBS)

url <- "https://cran.r-project.org/src/contrib/Archive/lsplsGlm/lsplsGlm_1.0.tar.gz"
pkgFile <- "lsplsGlm_1.0.tar.gz"
download.file(url, pkgFile)
install.packages(pkgFile, type = "source", repos = NULL)

This package is no longer on CRAN, so install.packages() cannot fetch it by name. This downloads the last archived source (1.0) and builds it locally. Install its dependencies first, and note that building from source needs the usual compiler toolchain.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-lsplsglm

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-lsplsGlm

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

CRAN check results are not tracked yet.

Code health

None

Tests · ratio 0.00

not tracked

Coverage

100%

Documentation · exports

Dependencies · direct

Documentation

READMENoVignettesNopkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: 88%
Return-value docs: 100%
References docs: 25%

Downloads

Releases R versions

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Also on73 r2u36 autocran

Dependencies

Declared dependencies

0 external dependencies (excludes base and recommended)

Depends (3)

R >= 3.0methodsstats

Imports (0)

none

LinkingTo (0)

none

Suggests (0)

none

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

–indirect (not tracked)

Nothing depends on this yet.

Code & Tests

Code Composition

Rd 864 (57%)R 655 (43%)

Code characteristics

Object systems

S32

Cyclomatic complexity: 2.0 median / 11 max

Test coverage

Line coverage

–

Expression

–

Tests / Examples

–

Functions

21 11 exported

Complexity

3.4 avg / 11 max

Call network

21 nodes / 25 edges

Test coverage has not been measured for this package yet; nodes fall back to a neutral fill.

Call graph

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Lowest coverage

Per-function coverage is not measured for this package yet.

People & History

People (3)

Other (3)

Caroline Bazzoli

Contributor

Sophie Lambert-Lacroix

Contributor

Thomas Bouleau

Contributor

Package Timeline

1 release. R releases are shown for context.

R
R 4.4.0 released · 2024-04-24
archivedRemoved from CRAN
2023-09-18
issues were not corrected despite reminders
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
R
R 4.0.0 released · 2020-04-24
R
R 3.6.0 released · 2019-04-26
R
R 3.5.0 released · 2018-04-23
1.0
2017-07-27
R
R 3.4.0 released · 2017-04-21

Package metadata

Total releases: 1
License: GPL (>= 2) OSI
Minimum R: ≥ 3.0
Bundled data: 1.1 MB / 3 files
Download size: not tracked yet
Installed size: not tracked yet
With dependencies: not tracked yet

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