R Observatory: Metrics for longmixr version 1.0.0

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

longmixr

1.0.0Package record

Longitudinal Consensus Clustering with 'flexmix'

0packages depend

3Kdownloads / year

–test coverage

13/13flavors OK

Overview

About

Maintained by Jonas HagenbergCRAN page ↗GitHub ↗Website ↗Issues ↗

An adaption of the consensus clustering approach from 'ConsensusClusterPlus' for longitudinal data. The longitudinal data is clustered with flexible mixture models from 'flexmix', while the consensus matrices are hierarchically clustered as in 'ConsensusClusterPlus'. By using the flexibility from 'flexmix' and 'FactoMineR', one can use mixed data types for the clustering.

Changes in 1.0.0

This is the first version of the package (new release).

From NEWS.md in the release

Install

R (CRAN)pak (dev)Ubuntu (r2u)

install.packages("longmixr", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("cellmapslab/longmixr")

Development version from cellmapslab/longmixr. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-longmixr

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

Health

CRAN checks

13OK

CRAN check page ↗

Slowest check: 3.5 min · r-oldrel-windows-x86_64

Status changes

OK13 OK2026-08-05
NOTE12 OK, 1 NOTE2026-08-01
OK13 OK2026-06-09
ERROR12 OK, 1 ERROR2026-06-08
OK14 OK2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 1.0.0

READMEYes · 366 wordsVignettesYes · 1 · dynamicNEWSYes · 33% structured · mentions 1.0.0Citation fileNoWebsiteYes · pkgdown

Help pages: 6
Examples that run: 100%4 run in a plain check
Exported functions with examples: 100%
Documented parameters: 82%
Return-value docs: 100%
Help pages citing references: 0%

Vignettes (1)

Example clustering analysis HTML

How these are measured

Downloads

3K

CRAN downloads in the past year

Rank #16,721 · ~8/day · ~251/mo

Releases R versions

Daily download trend is not available in this view yet.

22130 days

75990 days

3K1 year

Compare downloads with other packages →

Also on99 r2u

How downloads are counted

Repository

cellmapslab/longmixr ↗Organization: cellmapslab

4Stars

1Forks

0Open issues

0Open PRs

1Releases

88Commits

2Commit identities

License file reads as GPL-2.0 · 88 commits · Last activity 2024-02-06 · Default branch at 1.2.0, ahead of CRAN 1.0.0 (checked 2026-10-21)

Responsiveness

How these are sampled

PRs merged (all time): 93%
Median days to close, 50 most recently updated closed issues: 20
Median days to close, 50 most recently updated closed PRs: 0

Stars over time

2025-06-02 · 42026-07-07 · 4

How these are measured

PracticesBeta

7 development-tooling and community-health practices detected across 4 families in the upstream repository

Checks run against github.com/cellmapslab/longmixr on 2026-10-21.

Continuous integration (2)

GitHub ActionsR CMD check workflow

The R CMD check workflow runs on Linux

Docs source (3)

pkgdown

GitHub Pages site last deployed 2024-02-06 · The repository has a site deploy workflow

pkgdown site last built 2024-02-06

CRAN release process (1)

cran-comments.md

Lint, format, editor (1)

RStudio project

How this is detected·Detection ruleset v4 (2026-10-20)

Dependencies

Declared dependencies

15 external dependencies (excludes base and recommended)

Installing longmixr adds 39 packages (20 with compiled code, 24 MB of source tarballs). Heaviest: ggplot2 6.0 MB, survey 2.3 MB, Rcpp 1.8 MB. 1 more not on CRAN is not measured.

Depends (1)

R >= 3.5.0

Imports (8)

checkmate ConsensusClusterPlusgraphicsgrDevicesflexmix StatMatchstatsutils

LinkingTo (0)

none

Suggests (11)

testthat knitr rmarkdown dplyr tidyr ggplot2 ggalluvial FactoMineR factoextra lme4 purrr

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

How these are counted

Code & Tests

Datasets

People & History

People (4)

Jonas Hagenberg

Author, Maintainer since 1.0.0 (2022)

Peter Waltman

Author, Copyright holder

Matt Wilkerson

Author, Copyright holder

Max Planck Institute of Psychiatry

Copyright holder

Releases (1)

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
1.0.0Latest
record
2022-01-13 · current release
R
R 4.1.0 released · 2021-05-18

Package metadata

First published: 2022-01-13
Total releases: 1 / 4 yrs
License: GPL (>= 2) OSI
Minimum R: ≥ 3.5.0
Bundled data: 20 KB / 1 file
Download size: 2.1 MB

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("longmixr")

Format

Hagenberg, J., Max Planck Institute of Psychiatry, Waltman, P., & Wilkerson, M. (2022). longmixr: Longitudinal Consensus Clustering with 'flexmix' (Version 1.0.0) [Computer software]. https://doi.org/10.32614/CRAN.package.longmixr

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for longmixr version 1.0.0 [Data set]. HJJB, LLC. Data release v2026-10-24. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-24, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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