R Observatory: Metrics for localScore version 2.0.5

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

localScore

2.0.5

Package for Sequence Analysis by Local Score

0packages depend

3.5Kdownloads / year

68.1%test coverage

11/13checks pass

Overview

About

Maintained by David RobelinFirst published 2021-02-2310 releasesCRAN page ↗

Functionalities for calculating the local score and calculating statistical relevance (p-value) to find a local Score in a sequence of given distribution (D. Robelin, S. Déjean, S. Mercier (2025) doi:10.24072/pcjournal.650 ; S. Mercier and J.-J. Daudin (2001) https://hal.science/hal-00714174/) ; S. Karlin and S. Altschul (1990) https://pmc.ncbi.nlm.nih.gov/articles/PMC53667/ ; S. Mercier, D. Cellier and F. Charlot (2003) https://hal.science/hal-00937529v1/ ; A. Lagnoux, S. Mercier and P. Valois (2017) doi:10.1093/bioinformatics/btw699 ).

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("localScore", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-localscore

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-localScore

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-localScore

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

2NOTE11OK

Failing flavors

NOTE r-devel-linux-x86_64-debian-clang
NOTE r-devel-linux-x86_64-debian-gcc

Slowest check: 10.4 min · r-devel-windows-x86_64

Code health

Yes

Tests · ratio 0.56

68.1%

Coverage · measured lines

100%

Documentation · exports

2

Dependencies · direct

Check history

NOTE2026-07-11
12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-04-25
12 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-03-30
11 OK · 2 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
NOTE2026-03-10
12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMENoVignettesYes · dynamicpkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: 100%
Return-value docs: 100%
References docs: 3%

Downloads

3.5K

CRAN downloads in the past year

Rank #8,895 · ~10/day · ~292/mo

Releases R versions

Daily download trend is not available in this view yet.

17130 days

1K90 days

3.5K1 year

Compare downloads with other packages →

Also on407 r2u24 autocran

Dependencies

Declared dependencies

5 external dependencies (excludes base and recommended)

Depends (1)

R >= 3.2.0

Imports (2)

Rcpputils

LinkingTo (1)

Rcpp

Suggests (3)

knitr rmarkdown testthat

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

Datasets

People & History

People (7)

Maintainer (1)

David Robelin

Author, Maintainer

Authors (6)

David Robelin

Author, Maintainer

Sebastien Dejean

Author

Charly Marty

Author · added in 2.0.1

Sabine Mercier

Author

Sebastian Simon

Author

Chris Verschelden

Author · added in 2.0.1

Copyright holders (1)

The authors of Eigen the library for the included version of Eigen

Copyright holder

Package Timeline

10 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
2.0.5Latest
2026-04-22 · current release · diff ↗
2.0.3
2025-04-24 · diff ↗
2.0.2
2025-04-19 · diff ↗
R
R 4.5.0 released · 2025-04-11
2.0.1
2025-02-24 · diff ↗
R
R 4.4.0 released · 2024-04-24
1.0.11
2023-11-02 · diff ↗
1.0.10
2023-11-02 · diff ↗
R
R 4.3.0 released · 2023-04-21
1.0.8
2022-05-17 · diff ↗
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
1.0.6
2021-02-24 · diff ↗
1.0.5
2021-02-24 · diff ↗
1.0.4
2021-02-23

Show 1 earlier events

R
R 4.0.0 released · 2020-04-24

Package metadata

First published: 2021-02-23
Total releases: 10 / 5 yrs
License: GPL (>= 2) | file LICENSE OSI
Minimum R: ≥ 3.2.0
Bundled data: 141 KB / 14 files
Download size: 2.0 MB
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("localScore")

Format

Robelin, D., The authors of Eigen the library for the included version of Eigen, Dejean, S., Marty, C., Mercier, S., Simon, S., & Verschelden, C. (2026). localScore: Package for Sequence Analysis by Local Score (Version 2.0.5) [Computer software]. https://doi.org/10.32614/CRAN.package.localScore

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for localScore version 2.0.5 [Data set]. HJJB, LLC. Data release v2026-08-22. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-22, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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