localScore
Package for Sequence Analysis by Local Score
Description
Functionalities for calculating the local score and calculating statistical relevance (p-value) to find a local Score in a sequence of given distribution (D. Robelin, S. Déjean, S. Mercier (2025) <doi:10.24072/pcjournal.650> ; S. Mercier and J.-J. Daudin (2001) <https://hal.science/hal-00714174/>) ; S. Karlin and S. Altschul (1990) <https://pmc.ncbi.nlm.nih.gov/articles/PMC53667/> ; S. Mercier, D. Cellier and F. Charlot (2003) <https://hal.science/hal-00937529v1/> ; A. Lagnoux, S. Mercier and P. Valois (2017) <doi:10.1093/bioinformatics/btw699> ).
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CRAN Check Status
Show all 13 flavors
| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | OK |
| r-devel-linux-x86_64-debian-gcc | OK |
| r-devel-linux-x86_64-fedora-clang | OK |
| r-devel-linux-x86_64-fedora-gcc | OK |
| r-devel-windows-x86_64 | OK |
| r-oldrel-macos-arm64 | OK |
| r-oldrel-macos-x86_64 | OK |
| r-oldrel-windows-x86_64 | OK |
| r-patched-linux-x86_64 | OK |
| r-release-linux-x86_64 | OK |
| r-release-macos-arm64 | OK |
| r-release-macos-x86_64 | OK |
| r-release-windows-x86_64 | OK |
Check History
OK 12 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Apr 25, 2026
ERROR 11 OK · 2 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Mar 30, 2026
installed package size
installed size is 33.1Mb
sub-directories of 1Mb or more:
libs 32.3Mb
installed package size
installed size is 34.3Mb
sub-directories of 1Mb or more:
libs 33.5Mb
re-building of vignette outputs
Error(s) in re-building vignettes: --- re-building 'ExcursionsheightDocumentation.Rmd' using rmarkdown ! Package pdftex.def Error: File `0ea158f73c2210d0ccd837483b98f214f0778ee3.pdf' not found: using draft setting. Error: processing vignette 'Excur ...[truncated]... more info. --- failed re-building 'localScorePackageDocumentation.Rmd' SUMMARY: processing the following files failed: 'ExcursionsheightDocumentation.Rmd' 'localScorePackageDocumentation.Rmd' Error: Vignette re-building failed. Execution halted
NOTE 12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026
installed package size
installed size is 33.1Mb
sub-directories of 1Mb or more:
libs 32.3Mb
installed package size
installed size is 34.3Mb
sub-directories of 1Mb or more:
libs 33.5Mb