localScore

Package for Sequence Analysis by Local Score

v2.0.3 · Apr 24, 2025 · GPL (>= 2) | file LICENSE

Description

Functionalities for calculating the local score and calculating statistical relevance (p-value) to find a local Score in a sequence of given distribution (S. Mercier and J.-J. Daudin (2001) <https://hal.science/hal-00714174/>) ; S. Karlin and S. Altschul (1990) <https://pmc.ncbi.nlm.nih.gov/articles/PMC53667/> ; S. Mercier, D. Cellier and F. Charlot (2003) <https://hal.science/hal-00937529v1/> ; A. Lagnoux, S. Mercier and P. Valois (2017) <doi:10.1093/bioinformatics/btw699> ).

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CRAN Check Status

1 ERROR

2 NOTE

11 OK

Show all 14 flavors

Flavor	Status	Time
r-devel-linux-x86_64-debian-clang	OK	979s
r-devel-linux-x86_64-debian-gcc	OK	546.3s
r-devel-linux-x86_64-fedora-clang	OK	1595.8s
r-devel-linux-x86_64-fedora-gcc	OK	1685.2s
r-devel-macos-arm64	OK	184s
r-devel-windows-x86_64	OK	880s
r-oldrel-macos-arm64	NOTE
r-oldrel-macos-x86_64	NOTE	1077s
r-oldrel-windows-x86_64	ERROR	1144s
r-patched-linux-x86_64	OK	947.6s
r-release-linux-x86_64	OK	934.6s
r-release-macos-arm64	OK
r-release-macos-x86_64	OK	1050s
r-release-windows-x86_64	OK	930s

Check details (3 non-OK)

NOTE r-oldrel-macos-arm64

installed package size

installed size is 33.1Mb
  sub-directories of 1Mb or more:
    libs  32.3Mb

NOTE r-oldrel-macos-x86_64

installed package size

installed size is 34.3Mb
  sub-directories of 1Mb or more:
    libs  33.5Mb

ERROR r-oldrel-windows-x86_64

re-building of vignette outputs

Error(s) in re-building vignettes:
--- re-building 'ExcursionsheightDocumentation.Rmd' using rmarkdown
! Package pdftex.def Error: File `0ea158f73c2210d0ccd837483b98f214f0778ee3.pdf'
 not found: using draft setting.

Error: processing vignette 'ExcursionsheightDocumentation.Rmd' failed with diagnostics:
LaTeX failed to compile D:/RCompile/CRANpkg/local/4.4/localScore.Rcheck/vign_test/localScore/vignettes/ExcursionsheightDocumentation.tex. See https://yihui.org/tinytex/r/#debugging for debugging tips. See ExcursionsheightDocumentation.log for more info.
--- failed re-building 'ExcursionsheightDocumentation.Rmd'

--- re-building 'localScorePackageDocumentation.Rmd' using rmarkdown
! Package pdftex.def Error: File `71e631a0582487d33fb8cc6c2370dcbda5fac982.pdf'
 not found: using draft setting.

Error: processing vignette 'localScorePackageDocumentation.Rmd' failed with diagnostics:
LaTeX failed to compile D:/RCompile/CRANpkg/local/4.4/localScore.Rcheck/vign_test/localScore/vignettes/localScorePackageDocumentation.tex. See https://yihui.org/tinytex/r/#debugging for debugging tips. See localScorePackageDocumentation.log for more info.
--- failed re-building 'localScorePackageDocumentation.Rmd'

SUMMARY: processing the following files failed:
  'ExcursionsheightDocumentation.Rmd'
  'localScorePackageDocumentation.Rmd'

Error: Vignette re-building failed.
Execution halted

Check History

ERROR 11 OK · 2 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Mar 30, 2026

NOTE r-oldrel-macos-arm64

installed package size

installed size is 33.1Mb
  sub-directories of 1Mb or more:
    libs  32.3Mb

NOTE r-oldrel-macos-x86_64

installed package size

installed size is 34.3Mb
  sub-directories of 1Mb or more:
    libs  33.5Mb

ERROR r-oldrel-windows-x86_64

re-building of vignette outputs

Error(s) in re-building vignettes:
--- re-building 'ExcursionsheightDocumentation.Rmd' using rmarkdown
! Package pdftex.def Error: File `0ea158f73c2210d0ccd837483b98f214f0778ee3.pdf'
 not found: using draft setting.

Error: processing vignette 'Excur
...[truncated]...
more info.
--- failed re-building 'localScorePackageDocumentation.Rmd'

SUMMARY: processing the following files failed:
  'ExcursionsheightDocumentation.Rmd'
  'localScorePackageDocumentation.Rmd'

Error: Vignette re-building failed.
Execution halted

NOTE 12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026

NOTE r-oldrel-macos-arm64

installed package size

installed size is 33.1Mb
  sub-directories of 1Mb or more:
    libs  32.3Mb

NOTE r-oldrel-macos-x86_64

installed package size

installed size is 34.3Mb
  sub-directories of 1Mb or more:
    libs  33.5Mb

Dependency Network

Version History

new 2.0.3 Mar 10, 2026

updated 2.0.3 ← 2.0.2 diff Apr 23, 2025

updated 2.0.2 ← 2.0.1 diff Apr 18, 2025

updated 2.0.1 ← 1.0.11 diff Feb 23, 2025

updated 1.0.10 ← 1.0.8 diff Nov 1, 2023

updated 1.0.11 ← 1.0.10 diff Nov 1, 2023

updated 1.0.8 ← 1.0.6 diff May 16, 2022

updated 1.0.5 ← 1.0.4 diff Feb 23, 2021

updated 1.0.6 ← 1.0.5 diff Feb 23, 2021

new 1.0.4 Feb 22, 2021