R Observatory: Metrics for lgcp version 2.0-1

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

lgcp needs rpanel, which CRAN will archive unless its check problems are fixed by Oct 30.

lgcp

2.0-1Package record

Log-Gaussian Cox Process

0packages depend

9.5Kdownloads / year

22.8%test coverage

13/13flavors OK

Overview

About

Maintained by Benjamin M. TaylorCRAN page ↗

Spatial and spatio-temporal modelling of point patterns using the log-Gaussian Cox process. Bayesian inference for spatial, spatiotemporal, multivariate and aggregated point processes using Markov chain Monte Carlo. See Benjamin M. Taylor, Tilman M. Davies, Barry S. Rowlingson, Peter J. Diggle (2015) doi:10.18637/jss.v063.i07.

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("lgcp", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-lgcp

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-lgcp

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-lgcp

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

13OK

CRAN check page ↗

Slowest check: 13.1 min · r-oldrel-windows-x86_64

Status changes

OK13 OK2026-08-05
NOTE12 OK, 1 NOTE2026-08-01
OK13 OK2026-06-09
WARNING12 OK, 1 WARNING2026-06-08
OK14 OK2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 2.0-1

READMEYes · 2 wordsVignettesYes · 1 · staticNEWSYes · 0% structuredCitation fileYes · cites a publicationWebsitenot declared in DESCRIPTION

Description cites a JSS article

Help pages: 379 (1 internal)includes a package overview page
Examples that run: 28%7 run in a plain check · 18 never run
Exported functions with examples: 8%
Documented parameters: 99%
Return-value docs: 96%
Help pages citing references: 7%

Vignettes (1)

lgcp PDF

How these are measured

Downloads

9.5K

CRAN downloads in the past year

Rank #5,091 · ~26/day · ~791/mo

Releases R versions

Daily download trend is not available in this view yet.

68830 days

1.6K90 days

9.5K1 year

Compare downloads with other packages →

Also on87 r2u7 autocran182 c2d4u

How downloads are counted

Dependencies

Declared dependencies

10 external dependencies (excludes base and recommended)

Installing lgcp adds 33 packages (25 with compiled code, 40 MB of source tarballs). Heaviest: sf 9.3 MB, sp 4.3 MB, fields 3.9 MB.

Depends (1)

R >= 2.10

Imports (13)

spatstat.geom spatstat.explore spatstat.utils sp sf rastertcltkiterators ncdf4methodsrpanel fieldsMatrix

LinkingTo (0)

none

Suggests (0)

none

Enhances (0)

none

Dependencies facing archival

CRAN will archive these unless their check problems are fixed by the date shown. This package needs each one to install.

rpanelfix by Oct 30

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

How these are counted

Code & Tests

Datasets

People & History

People (6)

Benjamin M. Taylor

Author, Maintainer · added in 1.3-13

Tilman M. Davies

Author · added in 0.9-0

Peter J. Diggle

Author

Barry S. Rowlingson

Author · added in 1.3-13

Edzer Pebesma

Contributor · added in 2.0-1

Dominic Schumacher.

Contributor · added in 1.5

Maintainer since 0.9-1 (2011), previously Barry Rowlingson (0.9-0)

Listed in earlier versions (13)

Show 8 of 13 peopleHide 8 people

T. M. Davies

no longer listed · 2.13.2 to 1.3-11

P. J. Diggle

no longer listed · 2.13.2 to 1.01

B. S. Rowlingson

no longer listed · 2.13.2 to 1.3-11

B. M. Taylor

no longer listed · 2.13.2 to 1.3-11

Barry Rowlingson

no longer listed · 0.9-0

Ben Taylor

no longer listed · 0.9-0

P. J. Diggle. Additional code contributions from E. Pebesma.

no longer listed · 2.15.1 to 1.3-11

Peter J. Diggle. Additional code contributions from Edzer Pebesma.

no longer listed · 1.3-13 to 1.4

Releases (33)

Pick two releases to compare their code metrics.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
unarchivedReturned to CRAN
2022-05-17
archivedRemoved from CRAN
2022-05-04
requires archived package 'RandomFields'
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
unarchivedReturned to CRAN
2021-03-31
archivedRemoved from CRAN
2021-03-29
check problems were not corrected in time
R
R 4.0.0 released · 2020-04-24
R
R 3.6.0 released · 2019-04-26
R
R 3.5.0 released · 2018-04-23
R
R 3.4.0 released · 2017-04-21
R
R 3.3.0 released · 2016-05-03
R
R 3.2.0 released · 2015-04-16

Show 38 earlier eventsHide 38 earlier events

R
R 3.1.0 released · 2014-04-10
R
R 3.0.0 released · 2013-04-03
2.15.1Latest
record
2012-04-20 · current release · diff ↗ ·
removed 128 exports
initialiseAMCMC.constanth, initialiseAMCMC.andrieuthomsh, updateAMCMC.constanth, updateAMCMC.andrieuthomsh, stapp.SpatialPolygonsDataFrame, stapp.list, print.stapp, as.owin.stapp, as.stppp.stapp, as.owinlist.SpatialPolygonsDataFrame, as.owinlist.stapp, fftinterpolate.fromXYZ, fftinterpolate.fromFunction, fftinterpolate.fromSPDF, GAinitialise.nullAverage, GAinitialise.MonteCarloAverage, GAupdate.nullAverage, GAupdate.MonteCarloAverage, GAfinalise.nullAverage, GAfinalise.MonteCarloAverage, GAreturnvalue.nullAverage, GAreturnvalue.MonteCarloAverage, print.dump2dir, GFinitialise.nullFunction, GFinitialise.dump2dir, GFupdate.nullFunction, GFupdate.dump2dir, GFfinalise.nullFunction, GFfinalise.dump2dir, GFreturnvalue.nullFunction and 98 more

added 100 exports
BetaParameters, C.diff.single.im, CovFunction, CovParameters, EvaluatePrior, GPdrv, GPdrv2, GPdrv2_Multitype, GPlist2array, GPrealisation, GaussianPrior, K.diff.single, K.u, K.val, LogGaussianPrior, MALAlgcpAggregateSpatial.PlusPars, MALAlgcpMultitypeSpatial.PlusPars, MALAlgcpSpatial.PlusPars, MALAlgcpSpatioTemporal.PlusPars, PriorSpec, RandomFieldsCovFct, SpikedExponentialCovFct, addTemporalCovariates, aggCovInfo, aggregateCovariateInfo, aggregateformulaList, as.SpatialPixelsDataFrame, assigninterp, autocorr, autocorrMultitype and 70 more
R
R 2.15.0 released · 2012-03-30
R
R 2.14.0 released · 2011-10-31
2.13.2
record
2011-09-30 · diff ↗ ·
added 235 exports
initialiseAMCMC, updateAMCMC, constanth, andrieuthomsh, initialiseAMCMC.constanth, initialiseAMCMC.andrieuthomsh, updateAMCMC.constanth, updateAMCMC.andrieuthomsh, stapp, stapp.SpatialPolygonsDataFrame, stapp.list, SpatialPolygonsDataFrame.stapp, print.stapp, as.owin.stapp, as.stppp, as.stppp.stapp, as.owinlist, as.owinlist.SpatialPolygonsDataFrame, as.owinlist.stapp, computeGradtruncSpatial, computeGradtruncSpatioTemporal, fftgrid, fftinterpolate, fftinterpolate.fromXYZ, fftinterpolate.fromFunction, fftinterpolate.fromSPDF, getCounts, GAinitialise, GAupdate, GAfinalise and 205 more
2.0-1
record
2025-08-25 · diff ↗
2.0
record
2023-10-03 · diff ↗ ·
added 3 exports
gDisjoint_wg, gIntersects_pg, gTouches_wg
1.8-2
record
2022-11-22 · diff ↗
1.8
record
2022-05-17 · diff ↗ ·
removed 9 exports
C.diff.single.im, K.diff.single, K.u, K.val, g.diff.single, minimum.contrast, minimum.contrast.spatiotemporal, my.KinhomAverage, my.ginhomAverage

added 1 export
CovarianceFct
1.7
record
2021-03-31 · diff ↗
1.6
record
2020-03-06 · diff ↗
1.5
record
2018-05-22 · diff ↗ ·
added 2 exports
maternCovFct15, maternCovFct25
1.4
record
2017-04-13 · diff ↗
1.3-15
record
2016-07-18 · diff ↗
1.3-14
record
2016-01-11 · diff ↗
1.3-13
record
2015-11-19 · diff ↗
1.3-11
record
2015-09-10 · diff ↗
1.3-9
record
2015-02-25 · diff ↗
1.3-8
record
2015-02-04 · diff ↗
1.3-7
record
2015-01-24 · diff ↗
1.3-6
record
2014-05-09 · diff ↗ ·
added 1 export
.onAttach
1.3-4
record
2014-03-03 · diff ↗ ·
removed 1 export
.onAttach
1.3-3
record
2014-01-07 · diff ↗ ·
added 2 exports
lgcpbayes, lgcpvignette
1.3-2
record
2013-06-14 · diff ↗
1.3-1
record
2013-06-11 · diff ↗
1.3
record
2013-05-31 · diff ↗ ·
removed 141 exports
initialiseAMCMC.constanth, initialiseAMCMC.andrieuthomsh, updateAMCMC.constanth, updateAMCMC.andrieuthomsh, stapp.SpatialPolygonsDataFrame, stapp.list, print.stapp, as.owin.stapp, as.stppp.stapp, as.owinlist.SpatialPolygonsDataFrame, as.owinlist.stapp, fftinterpolate.fromXYZ, fftinterpolate.fromFunction, fftinterpolate.fromSPDF, GAinitialise.nullAverage, GAinitialise.MonteCarloAverage, GAupdate.nullAverage, GAupdate.MonteCarloAverage, GAfinalise.nullAverage, GAfinalise.MonteCarloAverage, GAreturnvalue.nullAverage, GAreturnvalue.MonteCarloAverage, print.dump2dir, GFinitialise.nullFunction, GFinitialise.dump2dir, GFupdate.nullFunction, GFupdate.dump2dir, GFfinalise.nullFunction, GFfinalise.dump2dir, GFreturnvalue.nullFunction and 111 more

added 93 exports
addTemporalCovariates, aggCovInfo, aggregateCovariateInfo, aggregateformulaList, assigninterp, autocorrMultitype, BetaParameters, betavals, blockcircbaseFunction, C.diff.single.im, checkObsWin, chooseCellwidth, clearinterp, condProbs, covEffects, CovFunction, cov.interp.fft, CovParameters, etavals, EvaluatePrior, exponentialCovFct, extendspatialAtRisk, fftmultiply, formulaList, GaussianPrior, g.diff.single, genFFTgrid, getCovParameters, getinterp, getLHSformulaList and 63 more
1.01
record
2013-01-23 · diff ↗
1.0
record
2012-11-23 · diff ↗ ·
added 10 exports
mstppp, mstppp.ppp, mstppp.stppp, mstppp.list, print.mstppp, plot.mstppp, as.ppp.mstppp, rescale.mstppp, integerise.mstppp, spatialAtRisk.lgcpgrid
0.9-7
record
2012-07-20 · diff ↗ ·
added 7 exports
getCellCounts, raster.lgcpgrid, as.SpatialPixelsDataFrame, as.SpatialPixelsDataFrame.lgcpgrid, autocorr, plot.lgcpAutocorr, rgauss
0.9-5
record
2012-06-11 · diff ↗ ·
added 2 exports
lambdaEst.stppp, lambdaEst.ppp
0.9-4-2
record
2012-05-30 · diff ↗ ·
removed 100 exports
BetaParameters, C.diff.single.im, CovFunction, CovParameters, EvaluatePrior, GPdrv, GPdrv2, GPdrv2_Multitype, GPlist2array, GPrealisation, GaussianPrior, K.diff.single, K.u, K.val, LogGaussianPrior, MALAlgcpAggregateSpatial.PlusPars, MALAlgcpMultitypeSpatial.PlusPars, MALAlgcpSpatial.PlusPars, MALAlgcpSpatioTemporal.PlusPars, PriorSpec, RandomFieldsCovFct, SpikedExponentialCovFct, addTemporalCovariates, aggCovInfo, aggregateCovariateInfo, aggregateformulaList, as.SpatialPixelsDataFrame, assigninterp, autocorr, autocorrMultitype and 70 more

added 128 exports
initialiseAMCMC.constanth, initialiseAMCMC.andrieuthomsh, updateAMCMC.constanth, updateAMCMC.andrieuthomsh, stapp.SpatialPolygonsDataFrame, stapp.list, print.stapp, as.owin.stapp, as.stppp.stapp, as.owinlist.SpatialPolygonsDataFrame, as.owinlist.stapp, fftinterpolate.fromXYZ, fftinterpolate.fromFunction, fftinterpolate.fromSPDF, GAinitialise.nullAverage, GAinitialise.MonteCarloAverage, GAupdate.nullAverage, GAupdate.MonteCarloAverage, GAfinalise.nullAverage, GAfinalise.MonteCarloAverage, GAreturnvalue.nullAverage, GAreturnvalue.MonteCarloAverage, print.dump2dir, GFinitialise.nullFunction, GFinitialise.dump2dir, GFupdate.nullFunction, GFupdate.dump2dir, GFfinalise.nullFunction, GFfinalise.dump2dir, GFreturnvalue.nullFunction and 98 more
0.9-4
record
2012-04-20 · diff ↗ ·
added 8 exports
as.array.lgcpgrid, seintens, seintens.lgcpPredict, discreteWindow, discreteWindow.lgcpPredict, integerise, integerise.stppp, .onAttach
0.9-3
record
2012-03-26 · diff ↗ ·
removed 1 export
computeGradtrunc
0.9-2
record
2012-03-12 · diff ↗ ·
added 9 exports
neigh2D, paramprecbase, paramprec, matchcovariance, sparsebase, meanfield.lgcpPredictINLA, varfield.lgcpPredictINLA, getlgcpPredictSpatialINLA, lgcpPredictSpatialINLA
0.9-1
record
2011-12-09 · diff ↗ ·
added 31 exports
stapp, stapp.SpatialPolygonsDataFrame, stapp.list, SpatialPolygonsDataFrame.stapp, print.stapp, as.owin.stapp, as.stppp, as.stppp.stapp, as.owinlist, as.owinlist.SpatialPolygonsDataFrame, as.owinlist.stapp, computeGradtruncSpatial, computeGradtruncSpatioTemporal, exceedProbsAggregated, lgcpgrid.matrix, lgcpPredictSpatial, MALAlgcpSpatial, target.and.grad.spatiotemporal, lgcpPredictAggregated, blockcircbase, inversebase, eigenfrombase, is.SPD, GammafromY, YfromGamma, target.and.grad.spatial, circulant, circulant.numeric, circulant.matrix, toral.cov.mat and 1 more
0.9-0
record
2011-10-02
R
R 2.13.0 released · 2011-04-13

Package metadata

First published: 2011-09-30
Total releases: 33 / 15 yrs
License: GPL-2 | GPL-3 OSI
Minimum R: ≥ 2.10
Bundled data: 7.9 KB / 3 files
Download size: 307 KB

Cite

Cite this package

Run in R for the authors' entry:

citation("lgcp")

The package provides a citation file, so citation() returns the authors' own entry.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for lgcp version 2.0-1 [Data set]. HJJB, LLC. Data release v2026-10-18. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-18, which the citation names so these numbers can be found later. More on citing and the projects behind them.

Report a problem with this page →