R Observatory: Metrics for klic version 1.0.4

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

This package was removed from CRAN on 2026-06-11. Its history is shown below.

Reason: email to the maintainer is undeliverable

Details below reflect version 1.0.4, its last release before removal.

klic

1.0.4Package record

Kernel Learning Integrative Clustering

0packages depend

1.6Kdownloads / year

–test coverage

–flavors OK

Overview

About

Maintained by Alessandra CabassiCRAN page ↗GitHub ↗

Kernel Learning Integrative Clustering (KLIC) is an algorithm that allows to combine multiple kernels, each representing a different measure of the similarity between a set of observations. The contribution of each kernel on the final clustering is weighted according to the amount of information carried by it. As well as providing the functions required to perform the kernel-based clustering, this package also allows the user to simply give the data as input: the kernels are then built using consensus clustering. Different strategies to choose the best number of clusters are also available. For further details please see Cabassi and Kirk (2020) doi:10.1093/bioinformatics/btaa593.

Install

R (source archive)pak (dev)

url <- "https://cran.r-project.org/src/contrib/Archive/klic/klic_1.0.4.tar.gz"
pkgFile <- "klic_1.0.4.tar.gz"
download.file(url, pkgFile)
install.packages(pkgFile, type = "source", repos = NULL)

This package is no longer on CRAN, so install.packages() cannot fetch it by name. This downloads the last archived source (1.0.4) and builds it locally. Install its dependencies first, and note that building from source needs the usual compiler toolchain.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("acabassi/klic")

Development version from acabassi/klic. Installs pak first if it is not already available.

Health

CRAN checks

CRAN check results are not tracked yet.

Status changes

NOTE11 OK, 2 NOTE2026-06-09
ERROR11 OK, 1 NOTE, 1 ERROR2026-06-08
NOTE11 OK, 2 NOTE2026-05-02
ERROR9 OK, 2 NOTE, 1 ERROR2026-04-25
NOTE9 OK, 5 NOTE2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 1.0.4

READMEYes · 132 wordsVignettesYes · 1 · dynamicNEWSNoCitation fileYes · cites a publicationWebsitenot declared in DESCRIPTION

Help pages: 7
Examples that run: 100%7 run in a plain check (3 of them under a condition)
Exported functions with examples: 100%
Documented parameters: 100%
Return-value docs: 100%
Help pages citing references: 71%

How these are measured

Downloads

1.6K

CRAN downloads in the past year

Rank #25,761 · ~4/day · ~131/mo

Releases R versions

Daily download trend is not available in this view yet.

030 days

090 days

1.6K1 year

Compare downloads with other packages →

Also on63 r2u7 autocran

How downloads are counted

Dependencies

Declared dependencies

8 external dependencies (excludes base and recommended)

Depends (1)

R >= 3.5.0

Imports (6)

Matrixclustercoca RColorBrewer pheatmaputils

LinkingTo (0)

none

Suggests (7)

Rmosek tikzDevice mclustgrDevicesgraphicsknitr markdown

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

–indirect (not tracked)

Nothing depends on this yet.

How these are counted

Code & Tests

Datasets

People & History

People (3)

Alessandra Cabassi

Author, Maintainer since 1.0.2 (2020)

Mehmet Gonen

Contributor

Paul DW Kirk

Thesis advisor

Releases (2)

Pick two releases to compare their code metrics.

archivedRemoved from CRAN
2026-06-11
email to the maintainer is undeliverable
R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
1.0.4
record
2020-07-06 · diff ↗
R
R 4.0.0 released · 2020-04-24
1.0.2
record
2020-04-03
R
R 3.6.0 released · 2019-04-26

Package metadata

First published: 2020-04-03
Total releases: 2 / 6 yrs
License: MIT + file LICENSE OSI
Minimum R: ≥ 3.5.0
Download size: 1.4 MB

Cite

Cite this package

Run in R for the authors' entry:

citation("klic")

The package provides a citation file, so citation() returns the authors' own entry.

It points to 10.1093/bioinformatics/btaa593.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for klic version 1.0.4 [Data set]. HJJB, LLC. Data release v2026-10-26. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-26, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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