R Observatory: Metrics for kindisperse version 0.10.2

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

CRAN requires the check problems on this package to be fixed before Oct 31 or it will be archived. See the check details

kindisperse

0.10.2Package record

Simulate and Estimate Close-Kin Dispersal Kernels

0packages depend

3.4Kdownloads / year

0.0%test coverage

0/13flavors OK

Overview

About

Maintained by Moshe-Elijah JasperCRAN page ↗GitHub ↗

Functions for simulating and estimating kinship-related dispersal. Based on the methods described in M. Jasper, T.L. Schmidt., N.W. Ahmad, S.P. Sinkins & A.A. Hoffmann (2019) doi:10.1111/1755-0998.13043 "A genomic approach to inferring kinship reveals limited intergenerational dispersal in the yellow fever mosquito". Assumes an additive variance model of dispersal in two dimensions, compatible with Wright's neighbourhood area. Simple and composite dispersal simulations are supplied, as well as the functions needed to estimate parent-offspring dispersal for simulated or empirical data, and to undertake sampling design for future field studies of dispersal. For ease of use an integrated Shiny app is also included.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("kindisperse", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("moshejasper/kindisperse")

Development version from moshejasper/kindisperse. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-kindisperse

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-kindisperse

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-kindisperse

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

13NOTE

Check messages

NOTERd filesr-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64

checkRd: (-1) mount_appdata.Rd:10: Lost braces; missing escapes or markup?
    10 | \item{x}{An object of class \code{KinPairData} or {KinPairSimulation}}
       |                                                   ^

NOTEdependencies in R coder-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Namespaces in Imports field not imported from:
  ‘fitdistrplus’ ‘plotly’
All declared Imports should be used.

CRAN check page ↗

Slowest check: 3.6 min · r-oldrel-windows-x86_64

Status changes

NOTE13 NOTE2026-06-09
ERROR12 NOTE, 1 ERROR2026-06-08
NOTE14 NOTE2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 0.10.2

READMEYes · 5,967 wordsVignettesYes · 1 · dynamicNEWSYes · 100% structured · does not mention 0.10.2Citation fileNoWebsitenot declared in DESCRIPTION

Help pages: 70 (1 internal)includes a package overview page
Examples that run: 100%33 run in a plain check
Exported functions with examples: 52%
Documented parameters: 99%
Return-value docs: 100%
Help pages citing references: 0%

Vignettes (1)

using-kindisperse

How these are measured

Downloads

3.4K

CRAN downloads in the past year

Rank #16,501 · ~9/day · ~282/mo

Releases R versions

Daily download trend is not available in this view yet.

28030 days

76690 days

3.4K1 year

Compare downloads with other packages →

Also on68 r2u5 autocran

How downloads are counted

Repository

moshejasper/kindisperse ↗Account: moshejasper

2Stars

0Forks

0Open issues

1Open PRs

9Releases

238Commits

1Commit identities

238 commits · Last activity 2024-10-21 · Default branch at 0.10.3, ahead of CRAN 0.10.2 (checked 2026-10-22)

Responsiveness

How these are sampled

PRs merged (all time): 100%
Median days to close, 50 most recently updated closed issues: 7
Median days to close, 50 most recently updated closed PRs: 0

How these are measured

PracticesBeta

6 development-tooling and community-health practices detected across 4 families in the upstream repository

Checks run against github.com/moshejasper/kindisperse on 2026-10-22.

Continuous integration (2)

GitHub ActionsR CMD check workflow

The R CMD check workflow runs on Linux, macOS and Windows, and on R-devel

Governance and community (2)

Code of conductIssue templates

Docs source (1)

README.Rmd

Lint, format, editor (1)

RStudio project

How this is detected·Detection ruleset v4 (2026-10-20)

Dependencies

Declared dependencies

18 external dependencies (excludes base and recommended)

Installing kindisperse adds 85 packages (44 with compiled code, 76 MB of source tarballs). Heaviest: stringi 11 MB, ggplot2 6.0 MB, data.table 5.7 MB.

Depends (1)

R >= 2.10

Imports (18)

ggplot2 readr shiny shinythemes ggrepel fitdistrplus LaplacesDemon herestatsmethodstibblegridmagrittr plotly dplyr rlang tidyselect stringr

LinkingTo (0)

none

Suggests (3)

testthat knitr rmarkdown

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

How these are counted

Code & Tests

Datasets

People & History

People (1)

Moshe-Elijah Jasper

Author, Maintainer since 0.9.2 (2021)

Releases (3)

Pick two releases to compare their code metrics.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
0.10.2Latest
record
2021-07-28 · current release · diff ↗
0.10.1
record
2021-07-17 · diff ↗ ·
removed 2 exports
KinPairData, KinPairSimulation

added 16 exports
sampling_stage<-, KinPairSimulation_custom, breeding_cycle, breeding_stage, dispersal_model, dispersal_vector, fs, get_dispersal_model, hs, is.DispersalModel, kin_pair_data, kin_pair_simulation, sampling_stage, simulate_kindist_custom, stages, visible_stage
R
R 4.1.0 released · 2021-05-18
0.9.2
record
2021-03-31
R
R 4.0.0 released · 2020-04-24

Package metadata

First published: 2021-03-31
Total releases: 3 / 5 yrs
License: MIT + file LICENSE OSI
Minimum R: ≥ 2.10
Bundled data: 4.3 KB / 1 file
Download size: 355 KB

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("kindisperse")

Format

Jasper, M. (2021). kindisperse: Simulate and Estimate Close-Kin Dispersal Kernels (Version 0.10.2) [Computer software]. https://doi.org/10.32614/CRAN.package.kindisperse

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for kindisperse version 0.10.2 [Data set]. HJJB, LLC. Data release v2026-10-24. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-24, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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