R Observatory: Metrics for kangar00 version 1.4.2

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

kangar00

1.4.2Package record

Kernel Approaches for Nonlinear Genetic Association Regression

0packages dependsuggested by 1

29.4Kdownloads / year

14.4%test coverage

13/13flavors OK

Overview

About

Maintained by Juliane ManitzCRAN page ↗GitHub ↗Website ↗Issues ↗

Methods to extract information on pathways, genes and various single-nucleotid polymorphisms (SNPs) from online databases. It provides functions for data preparation and evaluation of genetic influence on a binary outcome using the logistic kernel machine test (LKMT). Three different kernel functions are offered to analyze genotype information in this variance component test: A linear kernel, a size-adjusted kernel and a network-based kernel).

Install

R (CRAN)pak (dev)Ubuntu (r2u)openSUSE (OBS)

install.packages("kangar00", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("jmanitz/kangar00")

Development version from jmanitz/kangar00. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-kangar00

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-kangar00

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

13OK

CRAN check page ↗

Slowest check: 2.0 min · r-oldrel-windows-x86_64

Status changes

OK13 OK2026-08-05
NOTE12 OK, 1 NOTE2026-08-01
OK13 OK2026-06-09
ERROR12 OK, 1 ERROR2026-06-08
OK14 OK2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 1.4.2

README· In the repository, left out of the releaseVignettesNoNEWS· In the repository, left out of the releaseCitation fileYes · cites a publicationWebsiteYes

Help pages: 28 (4 internal)includes a package overview page
Examples that run: 81%17 run in a plain check · 4 never run
Exported functions with examples: 100%
Documented parameters: 88%
Return-value docs: 57%
Help pages citing references: 21%

How these are measured

Downloads

29.4K

CRAN downloads in the past year

Rank #2,850 · ~81/day · ~2.5K/mo

Releases R versions

Daily download trend is not available in this view yet.

1.9K30 days

5K90 days

29.4K1 year

Compare downloads with other packages →

Also on77 r2u6 autocran

How downloads are counted

Repository

jmanitz/kangar00 ↗Account: jmanitz

2Stars

0Forks

5Open issues

0Open PRs

0Releases

317Commits

7Commit identities

317 commits · Last activity 2024-09-09 · 0% stars, 30d

Responsiveness

How these are sampled

PRs merged (all time): not measured
Median days to close, 50 most recently updated closed issues: 84
Median days to close, 50 most recently updated closed PRs: not measured

Stars over time

2017-04-11 · 12026-07-07 · 2

How these are measured

PracticesBeta

1 development-tooling and community-health practice detected across 1 family in the upstream repository

Checks run against github.com/jmanitz/kangar00 on 2026-10-11.

Continuous integration (1)

Travis CI (config file)

How this is detected·Detection ruleset v3 (2026-09-26)

Dependencies

Declared dependencies

8 external dependencies (excludes base and recommended)

Installing kangar00 adds 28 packages (17 with compiled code, 36 MB of source tarballs). Heaviest: BH 14 MB, data.table 5.7 MB, igraph 4.8 MB.

Depends (1)

R >= 3.5.0

Imports (7)

methodsbigmemory sqldf CompQuadForm data.tablelatticeigraph

LinkingTo (0)

none

Suggests (3)

biomaRt KEGGgraph testthat

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Suggested by 1

Suggests, most downloaded first

mboost

How these are counted

Code & Tests

Datasets

People & History

People (7)

Juliane Manitz

Author, Maintainer since 1.0 (2017)

Author

Author

Author

Author

Contributor

Contributor

Releases (6)

Pick two releases to compare their code metrics.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
1.4.2Latest
record
2024-05-09 · current release · diff ↗
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
unarchivedReturned to CRAN
2022-12-06
1.4.1
record
2022-12-06 · diff ↗ ·
added 2 exports
kernel, lowrank_kernel
archivedRemoved from CRAN
2022-12-05
issues were not corrected despite reminders
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
R
R 4.0.0 released · 2020-04-24
1.4
record
2020-02-17 · diff ↗
R
R 3.6.0 released · 2019-04-26
unarchivedReturned to CRAN
2019-02-10
1.3
record
2019-02-10 · diff ↗
archivedRemoved from CRAN
2019-01-28
policy violation Failed when external resources were not available (repeatedly)

Show 4 earlier eventsHide 4 earlier events

R
R 3.5.0 released · 2018-04-23
1.1
record
2017-08-08 · diff ↗
1.0
record
2017-04-27
R
R 3.4.0 released · 2017-04-21

Package metadata

First published: 2017-04-27
Total releases: 6 / 9 yrs
License: GPL-2 OSI
Minimum R: ≥ 3.5.0
Bundled data: 276 KB / 9 files
Download size: 323 KB

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("kangar00")

The package provides a citation file that builds its entry when R runs it. Run citation() to see it.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for kangar00 version 1.4.2 [Data set]. HJJB, LLC. Data release v2026-10-18. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-18, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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