R Observatory: Metrics for kangar00 version 1.4.2

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

kangar00

1.4.2

Kernel Approaches for Nonlinear Genetic Association Regression

1packages depend

36.4Kdownloads / year

14.4%test coverage

13/13checks pass

Overview

About

Maintained by Juliane ManitzFirst published 2017-04-276 releasesCRAN page ↗GitHub ↗

Methods to extract information on pathways, genes and various single-nucleotid polymorphisms (SNPs) from online databases. It provides functions for data preparation and evaluation of genetic influence on a binary outcome using the logistic kernel machine test (LKMT). Three different kernel functions are offered to analyze genotype information in this variance component test: A linear kernel, a size-adjusted kernel and a network-based kernel).

Install

R (CRAN)pak (dev)Ubuntu (r2u)openSUSE (OBS)

install.packages("kangar00", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("jmanitz/kangar00")

Development version from jmanitz/kangar00. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-kangar00

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-kangar00

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 2.0 min · r-oldrel-windows-x86_64

Code health

Yes

Tests · ratio 0.04

14.4%

Coverage · measured lines

100%

Documentation · exports

7

Dependencies · direct

Check history

OK2026-08-05
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-08-01
12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-06-09
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-06-08
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMENoVignettesNopkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: 81%
Documented parameters: 88%
Return-value docs: 57%
References docs: 21%

Downloads

36.4K

CRAN downloads in the past year

Rank #2,587 · ~100/day · ~3K/mo

Releases R versions

Daily download trend is not available in this view yet.

1.8K30 days

7.1K90 days

36.4K1 year

Compare downloads with other packages →

Also on107 r2u17 autocran

Repository

GitHub ↗ jmanitz/kangar00

2Stars

0Forks

5Open issues

0Open PRs

0Releases

317Commits

7Contributors

317 commits · Last activity 2024-09-09

Stars over time

2017-04-11 · 12026-07-07 · 2

Repository practices

Upstream repositoryBeta

1 development-tooling and community-health practice detected across 1 family in the upstream repository

Checks run against github.com/jmanitz/kangar00 on 2026-08-16.

Continuous integration (1)

Travis CI

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

8 external dependencies (excludes base and recommended)

Depends (1)

R >= 3.5.0

Imports (7)

methodsbigmemory sqldf CompQuadForm data.tablelatticeigraph

LinkingTo (0)

none

Suggests (3)

biomaRt KEGGgraph testthat

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

1direct

0indirect

mboost

Code & Tests

Datasets

People & History

People (7)

Maintainer (1)

Juliane Manitz

Author, Maintainer

Authors (5)

Author, Maintainer

Author

Author

Author

Author

Contributors (2)

Heike Bickeboeller

Contributor

Saskia Freytag

Contributor

Package Timeline

6 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
1.4.2Latest
2024-05-09 · current release · diff ↗
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
1.4.1
2022-12-06 · diff ↗
unarchivedReturned to CRAN
2022-12-06
archivedRemoved from CRAN
2022-12-05
issues were not corrected despite reminders
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
R
R 4.0.0 released · 2020-04-24
1.4
2020-02-17 · diff ↗
R
R 3.6.0 released · 2019-04-26
1.3
2019-02-10 · diff ↗
unarchivedReturned to CRAN
2019-02-10
archivedRemoved from CRAN
2019-01-28
policy violation Failed when external resources were not available (repeatedly)

Show 4 earlier events

R
R 3.5.0 released · 2018-04-23
1.1
2017-08-08 · diff ↗
1.0
2017-04-27
R
R 3.4.0 released · 2017-04-21

Package metadata

First published: 2017-04-27
Total releases: 6 / 9 yrs
License: GPL-2 OSI
Minimum R: ≥ 3.5.0
Bundled data: 276 KB / 9 files
Download size: 323 KB
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("kangar00")

Format

Manitz, J., Bickeboeller, H., Burger, P., Freytag, S., Friedrichs, S., Ha, N. T., & Hofner, B. (2024). kangar00: Kernel Approaches for Nonlinear Genetic Association Regression (Version 1.4.2) [Computer software]. https://doi.org/10.32614/CRAN.package.kangar00

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for kangar00 version 1.4.2 [Data set]. HJJB, LLC. Data release v2026-08-18. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-18, which the citation names so these numbers can be found later. More on citing and the projects behind them.

Report a problem with this page →