jpinfect

2024.2026.18

Acquiring and Processing Data from Japan Institute for Health Security

0packages depend

3.8Kdownloads / year

79.3%test coverage

13/13checks pass

Overview

About

Maintained by Tomonori HoshiFirst published 2025-06-0411 releasesCRAN page ↗GitHub ↗

Download and post process the infectious disease case data from Japan Institute for Health Security. Also the package included ready-to-analyse datasets. See the data source website for further details https://id-info.jihs.go.jp/.

Install

R (CRAN)pak (dev)Ubuntu (r2u)openSUSE (OBS)

install.packages("jpinfect", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("TomonoriHoshi/jpinfect")

Development version from TomonoriHoshi/jpinfect. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-jpinfect

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-jpinfect

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 3.1 min · r-oldrel-macos-x86_64

Code health

Yes

Tests · ratio 0.21

79.3%

Coverage · measured lines

100%

Documentation · exports

Dependencies · direct

Check history

OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMENoVignettesYes · dynamicpkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: 11%
Documented parameters: 100%
Return-value docs: 89%
References docs: 0%

Downloads

3.8K

CRAN downloads in the past year

Rank #9,987 · ~10/day · ~313/mo

Releases R versions

Daily download trend is not available in this view yet.

29030 days

1.1K90 days

3.8K1 year

Compare downloads with other packages →

Also on230 r2u33 autocran

Repository

GitHub ↗ tomonorihoshi/jpinfect

7Stars

0Forks

0Open issues

0Open PRs

10Releases

157Commits

1Contributors

License GPL-3.0 · 157 commits · Last activity 2026-05-17 · 0% stars, 30d

Stars over time

2025-07-31 · 12026-07-07 · 7

Repository practices

Upstream repositoryBeta

2 development-tooling and community-health practices detected across 2 families in the upstream repository

Checks run against github.com/tomonorihoshi/jpinfect on 2026-07-19.

Continuous integration (1)

GitHub Actions

Research and citation (1)

CITATION.cff

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

15 external dependencies (excludes base and recommended)

Depends (1)

R >= 3.5.0

Imports (14)

dplyr future future.apply (>= 1.11.3)httr ISOweek magrittr (>= 2.0.3)readr readxlstatsstringi (>= 1.8.7)stringr tidyr tidyselect (>= 1.2.1)utils

LinkingTo (0)

none

Suggests (3)

knitr rmarkdown testthat

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

Datasets

People & History

People (3)

Maintainer (1)

Tomonori Hoshi

Author, Maintainer

Authors (3)

Tomonori Hoshi

Author, Maintainer

Erina Ishigaki

Author

Satoshi Kaneko

Author

Package Timeline

11 releases. Pick two to compare their code metrics. R releases are shown for context.

2024.2026.18Latest
2026-05-18 · current release · diff ↗
R
R 4.6.0 released · 2026-04-24
2023.2026.06
2026-02-23 · diff ↗
2023.2026.02
2026-01-27 · diff ↗
0.1.10
2026-01-16 · diff ↗
0.1.9
2025-12-18 · diff ↗
0.1.8
2025-11-25 · diff ↗
0.1.6
2025-11-08 · diff ↗
0.1.5
2025-10-08 · diff ↗
0.1.4
2025-10-07 · diff ↗
0.1.3
2025-09-11 · diff ↗
0.1.2
2025-06-04
R
R 4.5.0 released · 2025-04-11

Package metadata

First published: 2025-06-04
Total releases: 11 / 1 yrs
License: GPL (>= 3) OSI
Minimum R: ≥ 3.5.0
Bundled data: 1.0 MB / 3 files
Download size: 1.5 MB
Installed size: not tracked yet
With dependencies: not tracked yet

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