R Observatory: Metrics for ipd version 0.4.1

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

ipd

0.4.1

Inference on Predicted Data

0packages depend

3.6Kdownloads / year

1.9%test coverage

13/13checks pass

Overview

About

Maintained by Stephen SalernoFirst published 2024-10-245 releasesCRAN page ↗GitHub ↗

Performs valid statistical inference on predicted data (IPD) using recent methods, where for a subset of the data, the outcomes have been predicted by an algorithm. Provides a wrapper function with specified defaults for the type of model and method to be used for estimation and inference. Further provides methods for tidying and summarizing results. Salerno et al., (2025) doi:10.1093/bioinformatics/btaf055.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("ipd", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("ipd-tools/ipd")

Development version from ipd-tools/ipd. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-ipd

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-ipd

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-ipd

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 5.1 min · r-oldrel-windows-x86_64

Code health

Yes

Tests · ratio 0.00

1.9%

Coverage · measured lines

100%

Documentation · exports

10

Dependencies · direct

Check history

OK2026-08-05
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-08-01
12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-06-09
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-06-08
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-05-02
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Show 3 earlier snapshots

ERROR2026-04-25
11 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-03-18
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-03-10
11 OK · 3 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 1,110 wordsVignettesYes · dynamicpkgdown siteNoNEWSYes · 100% structuredCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: 100%
Return-value docs: 100%
References docs: 0%

Downloads

3.6K

CRAN downloads in the past year

Rank #8,428 · ~10/day · ~299/mo

Releases R versions

Daily download trend is not available in this view yet.

15930 days

1.1K90 days

3.6K1 year

Compare downloads with other packages →

Also on135 r2u20 autocran

Repository

GitHub ↗ ipd-tools/ipd

16Stars

5Forks

2Open issues

0Open PRs

1Releases

201Commits

4Contributors

201 commits · Last activity 2026-07-04 · +6.7% stars, 30d

Stars over time

2025-05-25 · 82026-07-22 · 16

Repository practices

Upstream repositoryBeta

5 development-tooling and community-health practices detected across 4 families in the upstream repository

Checks run against github.com/ipd-tools/ipd on 2026-08-16.

Continuous integration (1)

GitHub Actions

CRAN release process (2)

cran-comments.mdCRAN-SUBMISSION

Docs source (1)

README.Rmd

Lint, format, editor (1)

RStudio project

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

15 external dependencies (excludes base and recommended)

Depends (1)

R >= 4.4.0

Imports (10)

methodsgenerics caret gam rangersplinesstatsMASSrandomForest tibble

LinkingTo (0)

none

Suggests (9)

knitr patchwork rmarkdown spelling testthat tidyverse xfun BiocStyle BiocManager

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

People & History

People (11)

Maintainer (1)

Stephen Salerno

Author, Maintainer, Copyright holder

Authors (11)

Stephen Salerno

Author, Maintainer, Copyright holder

Awan Afiaz

Author

David Cheng

Author · added in 0.4.0

Jianhui Gao

Author · added in 0.4.0

Jesse Gronsbell

Author · added in 0.4.0

Author

Author

Author

Author

Author

Author

Copyright holders (1)

Stephen Salerno

Author, Maintainer, Copyright holder

Package Timeline

5 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
0.4.1Latest
2026-03-11 · current release · diff ↗
0.4.0
2026-03-06 · diff ↗
R
R 4.5.0 released · 2025-04-11
0.1.4
2025-01-07 · diff ↗
0.1.3
2024-12-03 · diff ↗
0.1.2
2024-10-24
R
R 4.4.0 released · 2024-04-24

Package metadata

First published: 2024-10-24
Total releases: 5 / 2 yrs
License: MIT + file LICENSE OSI
Minimum R: ≥ 4.4.0
Download size: 1.3 MB
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("ipd")

Format

Salerno, S., Afiaz, A., Cheng, D., Gao, J., Gronsbell, J., Hoffman, K., Leek, J. T., Lu, Q., McCormick, T. H., Miao, J., & Neufeld, A. (2026). ipd: Inference on Predicted Data (Version 0.4.1) [Computer software]. https://doi.org/10.32614/CRAN.package.ipd

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for ipd version 0.4.1 [Data set]. HJJB, LLC. Data release v2026-08-16. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-16, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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