R Observatory: Metrics for individual version 0.1.9

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

This package was removed from CRAN on 2022-08-08. Its history is shown below.

Reason: issues were not corrected in time

Details below reflect version 0.1.9, its last release before removal.

individual

0.1.9Package record

Framework for Specifying and Simulating Individual Based Models

0packages depend

–downloads / year

–test coverage

–flavors OK

Overview

About

Maintained by Giovanni CharlesCRAN page ↗GitHub ↗Website ↗

A framework which provides users a set of useful primitive elements for specifying individual based simulation models, with special attention models for infectious disease epidemiology. Users build models by specifying variables for each characteristic of individuals in the simulated population by using data structures exposed by the package. The package provides efficient methods for finding subsets of individuals based on these variables, or cohorts. Cohorts can then be targeted for variable updates or scheduled for events. Variable updates queued during a time step are executed at the end of a discrete time step, and the code places no restrictions on how individuals are allowed to interact. These data structures are designed to provide an intuitive way for users to turn their conceptual model of a system into executable code, which is fast and memory efficient.

Changes in 0.1.9

All variables and targeted events are resizable
Ragged variables for integers and doubles

From NEWS.md in the release

Install

R (source archive)pak (dev)

url <- "https://cran.r-project.org/src/contrib/Archive/individual/individual_0.1.9.tar.gz"
pkgFile <- "individual_0.1.9.tar.gz"
download.file(url, pkgFile)
install.packages(pkgFile, type = "source", repos = NULL)

This package is no longer on CRAN, so install.packages() cannot fetch it by name. This downloads the last archived source (0.1.9) and builds it locally. Install its dependencies first, and note that building from source needs the usual compiler toolchain.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("mrc-ide/individual")

Development version from mrc-ide/individual. Installs pak first if it is not already available.

Health

CRAN checks

CRAN check results are not tracked yet.

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 0.1.9

READMEYes · 575 wordsVignettesYes · 5 · dynamicNEWSYes · 100% structured · mentions 0.1.9Citation fileYes · cites a publicationWebsiteYes

Cites a JOSS paper

Help pages: 19
Examples that run: 100%1 run in a plain check
Exported functions with examples: 5%
Documented parameters: 100%
Return-value docs: 32%
Help pages citing references: 0%

How these are measured

Downloads

Releases R versions

Daily download trend is not available in this view yet.

Compare downloads with other packages →

Also on286 r2u3 autocran

How downloads are counted

Dependencies

Declared dependencies

12 external dependencies (excludes base and recommended)

Depends (0)

none

Imports (2)

R6 Rcpp

LinkingTo (2)

Rcpp testthat

Suggests (8)

ggplot2 knitr mockery rmarkdown pkgdown testthat (>= 2.1.0)xml2 bench

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

–indirect (not tracked)

Nothing depends on this yet.

How these are counted

Code & Tests

People & History

People (4)

Giovanni Charles

Author, Maintainer since 0.1.1 (2021)

Sean L. Wu

Author

Peter Winskill

Author · added in 0.1.6

Imperial College of Science, Technology and Medicine

Copyright holder

Listed in earlier versions (1)

Pete Winskill

no longer listed · 0.1.1 to 0.1.4

Releases (5)

Pick two releases to compare their code metrics.

R
R 4.3.0 released · 2023-04-21
archivedRemoved from CRAN
2022-08-08
issues were not corrected in time
0.1.9
record
2022-07-15 · diff ↗ ·
added 2 exports
RaggedDouble, RaggedInteger
R
R 4.2.0 released · 2022-04-22
0.1.7
record
2021-10-25 · diff ↗
0.1.6
record
2021-10-14 · diff ↗
unarchivedReturned to CRAN
2021-07-29
0.1.4
record
2021-07-29 · diff ↗
archivedRemoved from CRAN
2021-07-04
check issues were not corrected in time
0.1.1
record
2021-06-15
R
R 4.1.0 released · 2021-05-18

Package metadata

First published: 2021-06-15
Total releases: 5 / 5 yrs
License: MIT + file LICENSE OSI

Cite

Cite this package

Run in R for the authors' entry:

citation("individual")

The package provides a citation file, so citation() returns the authors' own entry.

It points to 10.21105/joss.03539.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for individual version 0.1.9 [Data set]. HJJB, LLC. Data release v2026-10-25. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-25, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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