R Observatory: Metrics for imputeCGM version 0.0.3

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

imputeCGM

0.0.3

Impute Missing Glucose Values in CGM Data

0packages depend

294downloads / year

32.5%test coverage

13/13checks pass

Overview

About

Maintained by Shubh SaraswatFirst published 2026-07-161 releasesCRAN page ↗GitHub ↗

Imputes missing glucose values in repeated-measures continuous glucose monitoring (CGM) data. Workflows create time-series features from raw timestamps, support model selection, and return the user's original columns plus an imputed glucose column. Methods include multiple imputation by chained equations using 'mice' (Azur et al. (2011) doi:10.1002/mpr.329), Random Forest regression using 'ranger' (Breiman (2001) doi:10.1023/A:1010933404324), k-nearest-neighbor regression using 'FNN' (Zhang (2016) doi:10.21037/atm.2016.03.37), 'XGBoost' using 'xgboost' (Chen and Guestrin (2016) doi:10.1145/2939672.2939785), 'LightGBM' using 'lightgbm' (Ke et al. (2017) https://papers.nips.cc/paper/6907-lightgbm-a-highly-efficient-gradient-boosting-decision), and ARIMA forecasting using 'forecast' (Hyndman and Khandakar (2008) doi:10.18637/jss.v027.i03). A 'Python'-compatible backend uses 'reticulate' to call 'pandas', 'scikit-learn', 'statsmodels', 'xgboost', and optional 'lightgbm'.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("imputeCGM", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("ZhangLabUKY/imputeCGMR")

Development version from ZhangLabUKY/imputeCGMR. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-imputecgm

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-imputeCGM

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-imputeCGM

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 3.0 min · r-oldrel-windows-x86_64

Code health

Yes

Tests · ratio 0.13

32.5%

Coverage · measured lines

100%

Documentation · exports

11

Dependencies · direct

Check history

OK2026-08-05
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-08-01
12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-07-17
6 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 763 wordsVignettesYes · dynamicpkgdown siteNoNEWSYes · 100% structuredCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: 100%
Return-value docs: 100%
References docs: 0%

Downloads

294

CRAN downloads in the past year

Rank #24,363 · ~1/day · ~25/mo

Releases R versions

Daily download trend is not available in this view yet.

19730 days

29490 days

2941 year

Compare downloads with other packages →

Also on4 r2u3 autocran

Repository

GitHub ↗ zhanglabuky/imputecgmr

0Stars

0Forks

0Open issues

0Open PRs

3Releases

25Commits

1Contributors

License GPL-2.0 · 25 commits · Last activity 2026-07-17

Repository practices

Upstream repositoryBeta

3 development-tooling and community-health practices detected across 3 families in the upstream repository

Checks run against github.com/zhanglabuky/imputecgmr on 2026-08-23.

Continuous integration (1)

GitHub Actions

Reproducibility and dev environment (1)

data-raw/

Docs source (1)

README.Rmd

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

15 external dependencies (excludes base and recommended)

Depends (1)

R >= 4.3

Imports (11)

mice FNN ranger data.table xgboost lightgbm forecast CGManalyzer lifecycle reticulate shiny

LinkingTo (0)

none

Suggests (4)

testthat spelling knitr rmarkdown

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

Datasets

People & History

People (3)

Maintainer (1)

Shubh Saraswat

Maintainer, Author, Copyright holder

Authors (3)

Shubh Saraswat

Maintainer, Author, Copyright holder

Hasin Shahed Shad

Author

Xiaohua Douglas Zhang

Author

Copyright holders (1)

Shubh Saraswat

Maintainer, Author, Copyright holder

Package Timeline

1 release. R releases are shown for context.

0.0.3Latest
2026-07-16 · current release
R
R 4.6.0 released · 2026-04-24

Package metadata

First published: 2026-07-16
Total releases: 1 / 1 yrs
License: GPL (>= 2) OSI
Minimum R: ≥ 4.3
Bundled data: 7.9 KB / 2 files
Download size: 83 KB
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("imputeCGM")

Format

Saraswat, S., Hasin Shahed Shad, & Zhang, X. D. (2026). imputeCGM: Impute Missing Glucose Values in CGM Data (Version 0.0.3) [Computer software]. https://doi.org/10.32614/CRAN.package.imputeCGM

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for imputeCGM version 0.0.3 [Data set]. HJJB, LLC. Data release v2026-08-24. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-24, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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