imcExperiment

0.99.0

Mass Cytometry S4 Class Structure Pipeline for Images

0packages depend

2.9Kdownloads / year

–test coverage

13/13checks pass

Overview

About

Maintained by Anthony ColomboFirst published 2021-08-191 releasesCRAN page ↗

Containerizes cytometry data and allows for S4 class structure to extend slots related to cell morphology, spatial coordinates, phenotype network information, and unique cellular labeling.

Install

R (CRAN)Ubuntu (r2u)

install.packages("imcExperiment", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-imcexperiment

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

Health

CRAN checks

13OK

Slowest check: 8.7 min · r-devel-linux-x86_64-fedora-clang

Check history

OK2026-05-10
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-05-03
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

Documentation signals are not tracked yet for this package.

Downloads

2.9K

CRAN downloads in the past year

Rank #15,194 · ~8/day · ~240/mo

imcExperiment Releases R versions

Daily download trend is not available in this view yet.

21430 days

71690 days

2.9K1 year

Compare downloads with other packages →

Also on110 r2u

Dependencies

Declared dependencies

6 external dependencies (excludes base and recommended)

Depends (3)

R >= 4.0SingleCellExperimentmethods

Imports (4)

SummarizedExperiment S4Vectors spatstat.geomstats

LinkingTo (0)

none

Suggests (2)

knitr rmarkdown

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

Datasets

People & History

People (1)

Maintainer (1)

Anthony Colombo

Author, Maintainer

Authors (1)

Anthony Colombo

Author, Maintainer

Package Timeline

1 release. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
0.99.0Latest
2026-03-10 · current release
R
R 4.5.0 released · 2025-04-11

Package metadata

First published: 2021-08-19
Total releases: 1 / 5 yrs
License: MIT + file LICENSE OSI
Download size: 1.9 MB
Installed size: not tracked yet
With dependencies: not tracked yet

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