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idr

Irreproducible Discovery Rate

v1.3 · Jun 21, 2022 · GPL (>= 2.0)

Description

This is a package for estimating the copula mixture model and plotting correspondence curves. Details are in "Measuring reproducibility of high-throughput experiments" (2011), Annals of Applied Statistics, Vol. 5, No. 3, 1752-1779, by Li, Brown, Huang, and Bickel.

Downloads

CRAN

334

Last 30 days

13377th

956

Last 90 days

7.7K

Last year

Trend: +33.6% (30d vs prior 30d)

r2u CRAN

0

Last 30 days

23

Last 90 days

101

Last year

Trend: -100% (30d vs prior 30d)

autoCRAN

1

Last 7 days

6

Last 30 days

0

All-time

autoCRAN-only: this name is served only by autoCRAN, so the count is exact.

conda-forge CRAN

120

Last 30 days

333

Last 90 days

2.1K

Last year

Trend: -25.9% (30d vs prior 30d)

bioconda CRAN

25

Last 30 days

90

Last 90 days

354

Last year

Trend: -30.6% (30d vs prior 30d)

CRAN Check Status

2 NOTE
11 OK
Show all 13 flavors
Flavor Status
r-devel-linux-x86_64-debian-clang NOTE
r-devel-linux-x86_64-debian-gcc NOTE
r-devel-linux-x86_64-fedora-clang OK
r-devel-linux-x86_64-fedora-gcc OK
r-devel-windows-x86_64 OK
r-oldrel-macos-arm64 OK
r-oldrel-macos-x86_64 OK
r-oldrel-windows-x86_64 OK
r-patched-linux-x86_64 OK
r-release-linux-x86_64 OK
r-release-macos-arm64 OK
r-release-macos-x86_64 OK
r-release-windows-x86_64 OK
Check details (2 non-OK)
NOTE r-devel-linux-x86_64-debian-clang

CRAN incoming feasibility

Maintainer: ‘Qunhua Li <qunhua.li@psu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Qunhua",
                    family = "Li",
                    role = c("aut", "cre"),
                    email = "qunhua.li@psu.edu")
as necessary.
NOTE r-devel-linux-x86_64-debian-gcc

CRAN incoming feasibility

Maintainer: ‘Qunhua Li <qunhua.li@psu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Qunhua",
                    family = "Li",
                    role = c("aut", "cre"),
                    email = "qunhua.li@psu.edu")
as necessary.

Check History

NOTE 12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026
NOTE r-devel-linux-x86_64-debian-clang

CRAN incoming feasibility

Maintainer: ‘Qunhua Li <qunhua.li@psu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Qunhua",
                    family = "Li",
                    role = c("aut", "cre"),
                    email = "qunhua.li@psu.edu")
as necessary.
NOTE r-devel-linux-x86_64-debian-gcc

CRAN incoming feasibility

Maintainer: ‘Qunhua Li <qunhua.li@psu.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Qunhua",
                    family = "Li",
                    role = c("aut", "cre"),
                    email = "qunhua.li@psu.edu")
as necessary.

Code

Structure

Lines of code

1,698

Files

29

Compiled share

0%

Has compiled src

No

Language breakdown

R 767 (45.2%)Docs 931 (54.8%)

API

Exported functions

0

Internal functions

0

Recent export changes

v1.2+1 pattern:^[[:alpha:]]+  −1 pattern:.
v1.1.1+1 pattern:.

Testing & CI

Has tests

No

Test-to-code ratio

0.00

testthat edition

CI present

No

CI type

[]

PR gated

No

Docs

Return-value doc rate

\dontrun example ratio

0%

Roxygen coverage

Has pkgdown

No

NEWS present

No

Health & Security signals

Informational signals; not verdicts.

on.exit coverage

Unsafe pattern score

0

Dep constraint coverage

0%

Secret pattern count

0

Bundled 3rd-party code

2 items

Portability & License

Min R version

System requirements

C++ standard

License

GPL (>= 2.0)

License flags

not SPDX, not OSI

History

Versions

5

First release

2011-06-08

Latest release

2022-06-21

Avg cadence

582 days

Cold removal rate

100%

Dep drift

1

LOC over versions

v1.0: 1,152 LOCv1.1: 1,152 LOCv1.1.1: 1,675 LOCv1.2: 1,698 LOCv1.3: 1,698 LOC

Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/cran-code-metrics.

Reverse Dependencies (2)

depends

eCV

suggests

Dependency Network

Dependencies Reverse dependencies eCV GMCM idr

Version History

6 tracked
new 1.3 Mar 10, 2026
updated 1.3 ← 1.2 diff Jun 20, 2022
updated 1.2 ← 1.1.1 diff Sep 3, 2014
updated 1.1.1 ← 1.1 diff Oct 26, 2012
updated 1.1 ← 1.0 diff Jul 22, 2011
new 1.0 Jun 14, 2011