R Observatory: Metrics for icmm version 1.2

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

icmm

1.2Package record

Empirical Bayes Variable Selection via ICM/M Algorithm

0packages depend

2.4Kdownloads / year

–test coverage

8/13flavors OK

Overview

About

Maintained by Vitara PungpapongCRAN page ↗

Empirical Bayes variable selection via ICM/M algorithm for normal, binary logistic, and Cox's regression. The basic problem is to fit high-dimensional regression which sparse coefficients. This package allows incorporating the Ising prior to capture structure of predictors in the modeling process. More information can be found in the papers listed in the URL below.

Changes in 1.2

Fix bug for option ising.prior = TRUE in the main function icmm.

From NEWS.md in the release

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("icmm", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-icmm

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-icmm

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-icmm

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

5NOTE8OK

Check messages

NOTEdependencies in R coder-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64

r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Base package in Suggests/Enhances imported in NAMESPACE:
  ‘stats’

r-devel-windows-x86_64

Base package in Suggests/Enhances imported in NAMESPACE:
  'stats'

CRAN check page ↗

Slowest check: 1.0 min · r-oldrel-windows-x86_64

Status changes

NOTE8 OK, 5 NOTENow
NOTE11 OK, 2 NOTE2026-09-12
OK13 OK2026-08-05
NOTE12 OK, 1 NOTE2026-08-01
OK14 OK2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 1.2

READMENoVignettesNoNEWSYes · 67% structured · mentions 1.2Citation fileNoWebsitenot declared in DESCRIPTION

Help pages: 20includes a package overview page
Examples that run: 100%19 run in a plain check
Exported functions with examples: 100%
Documented parameters: not tracked
Return-value docs: not tracked
Help pages citing references: 10%

How these are measured

Downloads

2.4K

CRAN downloads in the past year

Rank #19,472 · ~6/day · ~197/mo

Releases R versions

Daily download trend is not available in this view yet.

26730 days

67690 days

2.4K1 year

Compare downloads with other packages →

Also on71 r2u5 autocran

How downloads are counted

Dependencies

Declared dependencies

1 external dependency (excludes base and recommended)

Installing icmm adds 2 packages (1 with compiled code, 1.2 MB of source tarballs). Heaviest: EbayesThresh 692 KB, wavethresh 567 KB.

Depends (0)

none

Imports (1)

EbayesThresh

LinkingTo (0)

none

Suggests (2)

MASSstats

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

How these are counted

Code & Tests

Datasets

People & History

People (3)

Vitara Pungpapong

Author, Maintainer since 1.0 (2017)

Dabao Zhang

Contributor

Min Zhang

Contributor

Releases (3)

Pick two releases to compare their code metrics.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
1.2Latest
record
2021-05-26 · current release · diff ↗
R
R 4.1.0 released · 2021-05-18
R
R 4.0.0 released · 2020-04-24
R
R 3.6.0 released · 2019-04-26
R
R 3.5.0 released · 2018-04-23
1.1
record
2017-10-12 · diff ↗
1.0
record
2017-07-27
R
R 3.4.0 released · 2017-04-21

Package metadata

First published: 2017-07-27
Total releases: 3 / 9 yrs
License: GPL (>= 2) OSI
Bundled data: 913 KB / 7 files
Download size: 924 KB

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("icmm")

Format

Pungpapong, V., Zhang, D., & Zhang, M. (2021). icmm: Empirical Bayes Variable Selection via ICM/M Algorithm (Version 1.2) [Computer software]. https://doi.org/10.32614/CRAN.package.icmm

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for icmm version 1.2 [Data set]. HJJB, LLC. Data release v2026-10-23. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-23, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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