R Observatory: Metrics for iccCounts version 1.1.4

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

iccCounts

1.1.4Package record

Intraclass Correlation Coefficient for Count Data

0packages depend

3.6Kdownloads / year

–test coverage

13/13flavors OK

Overview

About

Maintained by Josep L. CarrascoCRAN page ↗

Estimates the intraclass correlation coefficient (ICC) for count data to assess repeatability (intra-methods concordance) and concordance (between-method concordance). In the concordance setting, the ICC is equivalent to the concordance correlation coefficient estimated by variance components. The ICC is estimated using the estimates from generalized linear mixed models. The within-subjects distributions considered are: Poisson; Negative Binomial with additive and proportional extradispersion; Zero-Inflated Poisson; and Zero-Inflated Negative Binomial with additive and proportional extradispersion. The statistical methodology used to estimate the ICC with count data can be found in Carrasco (2010) doi:10.1111/j.1541-0420.2009.01335.x.

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("iccCounts", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-icccounts

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-iccCounts

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-iccCounts

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

13OK

CRAN check page ↗

Slowest check: 11.9 min · r-oldrel-windows-x86_64

Status changes

OK13 OK2026-08-05
NOTE12 OK, 1 NOTE2026-08-01
OK13 OK2026-06-09
ERROR12 OK, 1 ERROR2026-06-08
OK14 OK2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 1.1.4

READMENoVignettesYes · 1 · dynamicNEWSNoCitation fileNoWebsitenot declared in DESCRIPTION

Help pages: 48 (37 internal)
Examples that run: 50%4 run in a plain check · 4 only when donttest examples are enabled (R CMD check --as-cran)
Exported functions with examples: 100%
Documented parameters: 100%
Return-value docs: 100%
Help pages citing references: 10%

Vignettes (1)

Examples of assessment of agreement with count data HTML

How these are measured

Downloads

3.6K

CRAN downloads in the past year

Rank #12,212 · ~10/day · ~304/mo

Releases R versions

Daily download trend is not available in this view yet.

36730 days

90690 days

3.6K1 year

Compare downloads with other packages →

Also on84 r2u4 autocran

How downloads are counted

Dependencies

Declared dependencies

8 external dependencies (excludes base and recommended)

Installing iccCounts adds 59 packages (34 with compiled code, 62 MB of source tarballs). Heaviest: stringi 11 MB, ggplot2 6.0 MB, glmmTMB 5.2 MB.

Depends (1)

R >= 4.0

Imports (6)

glmmTMB ggplot2 Deriv gridExtra VGAM dplyr

LinkingTo (0)

none

Suggests (2)

knitr rmarkdown

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

How these are counted

Code & Tests

Datasets

People & History

People (1)

Josep L. Carrasco

Author, Maintainer since 1.0.1 (2021)

Listed in earlier versions (1)

Carrasco

no longer listed · 1.1.4

Releases (7)

Pick two releases to compare their code metrics.

R
R 4.6.0 released · 2026-04-24
1.1.4Latest
record
2026-01-30 · current release · diff ↗
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
1.1.2
record
2024-02-28 · diff ↗
R
R 4.3.0 released · 2023-04-21
1.1.1
record
2022-06-09 · diff ↗
1.1.0
record
2022-06-03 · diff ↗ ·
added 1 export
plot_BA
R
R 4.2.0 released · 2022-04-22
unarchivedReturned to CRAN
2021-07-30
1.0.3
record
2021-07-30 · diff ↗
archivedRemoved from CRAN
2021-07-10
requires archived package 'glmmTMB'
1.0.2
record
2021-06-30 · diff ↗
1.0.1
record
2021-06-01
R
R 4.1.0 released · 2021-05-18

Package metadata

First published: 2021-06-01
Total releases: 7 / 5 yrs
License: GPL (>= 2) OSI
Minimum R: ≥ 4.0
Bundled data: 1.5 KB / 1 file
Download size: 153 KB

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("iccCounts")

Format

Carrasco, J. L. (2026). iccCounts: Intraclass Correlation Coefficient for Count Data (Version 1.1.4) [Computer software]. https://doi.org/10.32614/CRAN.package.iccCounts

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for iccCounts version 1.1.4 [Data set]. HJJB, LLC. Data release v2026-10-23. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-23, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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