R Observatory: Metrics for iSubGen version 1.0.5

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

iSubGen

1.0.5

Integrative Subtype Generation

0packages depend

2.9Kdownloads / year

–test coverage

12/13checks pass

Overview

About

Maintained by Mao TianFirst published 2021-04-154 releasesCRAN page ↗GitHub ↗

Multi-data type subtyping, which is data type agnostic and accepts missing data. Subtyping is performed using intermediary assessments created with autoencoders and similarity calculations. See Fox et al. (2024) doi:10.1016/j.crmeth.2024.100884 for details.

Install

R (CRAN)pak (dev)Ubuntu (r2u)

install.packages("iSubGen", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("uclahs-cds/package-iSubGen")

Development version from uclahs-cds/package-iSubGen. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-isubgen

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

Health

CRAN checks

1ERROR12OK

Failing flavors

ERROR r-oldrel-macos-arm64

Slowest check: 2.8 min · r-oldrel-macos-x86_64

Code health

None

Tests · ratio 0.00

not tracked

Coverage

5

Dependencies · direct

Check history

ERROR2026-03-10
12 OK · 0 NOTE · 0 WARNING · 2 ERROR · 0 FAILURE

Documentation

READMEYes · 1,134 wordsVignettesYes · dynamicpkgdown siteNoNEWSYes · 100% structuredCode of conductNoContributing guideNo

Examples that run: 73%
Documented parameters: not tracked
Return-value docs: not tracked
References docs: 0%

Downloads

2.9K

CRAN downloads in the past year

Rank #12,668 · ~8/day · ~242/mo

Releases R versions

Daily download trend is not available in this view yet.

29330 days

78990 days

2.9K1 year

Compare downloads with other packages →

Also on121 r2u

Repository

GitHub ↗ uclahs-cds/package-isubgen

1Stars

0Forks

5Open issues

1Open PRs

3Releases

171Commits

7Contributors

License GPL-2.0 · 171 commits · Last activity 2026-01-23

Stars over time

2021-08-13 · 12026-07-07 · 1

Repository practices

Upstream repositoryBeta

1 development-tooling and community-health practice detected across 1 family in the upstream repository

Checks run against github.com/uclahs-cds/package-isubgen on 2026-08-16.

Continuous integration (1)

GitHub Actions

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

6 external dependencies (excludes base and recommended)

Depends (1)

R >= 3.2.3

Imports (5)

ConsensusClusterPlusclusterkeras tensorflow philentropy

LinkingTo (0)

none

Suggests (2)

knitr rmarkdown

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

People & History

People (4)

Maintainer (1)

Mao Tian

Maintainer · added in 1.0.4

Authors (2)

Natalie Fox

Author · added in 1.0.4

Paul Boutros

Author · added in 1.0.4

Contributors (1)

Dan Knight

Contributor · added in 1.0.4

Package Timeline

4 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
1.0.5Latest
2026-02-24 · current release · diff ↗
1.0.4
2026-01-24 · diff ↗
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
1.0.1
2021-04-22 · diff ↗
1.0.0
2021-04-15
R
R 4.0.0 released · 2020-04-24

Package metadata

First published: 2021-04-15
Total releases: 4 / 5 yrs
License: GPL-2 OSI
Additional repositories: bioc.r-universe.dev
Minimum R: ≥ 3.2.3
Download size: 2.1 MB
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("iSubGen")

Format

Mao Tian, Dan Knight, Natalie Fox, & Paul Boutros. (2026). iSubGen: Integrative Subtype Generation (Version 1.0.5) [Computer software]. https://doi.org/10.32614/CRAN.package.iSubGen

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for iSubGen version 1.0.5 [Data set]. HJJB, LLC. Data release v2026-08-18. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-18, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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