This package was removed from CRAN on 2024-11-11. Its history is shown below.

Reason: issues were not corrected despite reminders

Details below reflect version 1.1-1, its last release before removal.

iRafNet

1.1-1

Integrative Random Forest for Gene Regulatory Network Inference

0packages depend

–downloads / year

–test coverage

–checks pass

Overview

About

Maintained by Francesca Petralia2 releasesCRAN page ↗

Provides a flexible integrative algorithm that allows information from prior data, such as protein protein interactions and gene knock-down, to be jointly considered for gene regulatory network inference.

Install

R (source archive)Ubuntu (r2u)openSUSE (OBS)

url <- "https://cran.r-project.org/src/contrib/Archive/iRafNet/iRafNet_1.1-1.tar.gz"
pkgFile <- "iRafNet_1.1-1.tar.gz"
download.file(url, pkgFile)
install.packages(pkgFile, type = "source", repos = NULL)

This package is no longer on CRAN, so install.packages() cannot fetch it by name. This downloads the last archived source (1.1-1) and builds it locally. Install its dependencies first, and note that building from source needs the usual compiler toolchain.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-irafnet

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-iRafNet

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

CRAN check results are not tracked yet.

Documentation

Documentation signals are not tracked yet for this package.

Downloads

iRafNet Releases R versions

Daily download trend is not available in this view yet.

Compare downloads with other packages →

Also on392 r2u12 autocran

Dependencies

Declared dependencies

1 external dependency (excludes base and recommended)

Depends (1)

R >= 3.0.0

Imports (1)

ROCR

LinkingTo (0)

none

Suggests (0)

none

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

–indirect (not tracked)

Nothing depends on this yet.

Code & Tests

People & History

People (8)

Maintainer (1)

Francesca Petralia

Author, Maintainer · added in 1.1-1

Authors (4)

Francesca Petralia

Author, Maintainer · added in 1.1-1

Pei Wang

Author · added in 1.1-1

Zhidong Tu

Author · added in 1.1-1

Jialiang Yang

Author · added in 1.1-1

Contributors (4)

Adele Cutler

Contributor · added in 1.1-1

Leo Breiman

Contributor · added in 1.1-1

Andy Liaw

Contributor · added in 1.1-1

Matthew Wiener

Contributor · added in 1.1-1

Listed in earlier versions (8)

Adele Cutler Developer

no longer listed · 0.1-1

Andy Liaw Developer

no longer listed · 0.1-1

Francesca Petralia Developer

no longer listed · 0.1-1

Jialiang Yang Developer

no longer listed · 0.1-1

Leo Breiman Developer

no longer listed · 0.1-1

Matthew Wiener Developer

no longer listed · 0.1-1

Pei Wang Developer

no longer listed · 0.1-1

Zhidong Tu Developer

no longer listed · 0.1-1

Package Timeline

2 releases. R releases are shown for context.

R
R 4.5.0 released · 2025-04-11
archivedRemoved from CRAN
2024-11-11
issues were not corrected despite reminders
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
R
R 4.0.0 released · 2020-04-24
R
R 3.6.0 released · 2019-04-26
R
R 3.5.0 released · 2018-04-23
R
R 3.4.0 released · 2017-04-21
1.1-1
2016-10-26 · diff ↗
R
R 3.3.0 released · 2016-05-03
0.1-1
2016-01-28
R
R 3.2.0 released · 2015-04-16

Package metadata

Total releases: 2
License: GPL (>= 2) OSI
Download size: not tracked yet
Installed size: not tracked yet
With dependencies: not tracked yet

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