R Observatory: Metrics for iDOVE version 1.5

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

iDOVE

1.5Package record

Durability of Vaccine Efficacy Against SARS-CoV-2 Infection

0packages depend

2.9Kdownloads / year

–test coverage

13/13flavors OK

Overview

About

Maintained by Shannon T. HollowayCRAN page ↗

Implements a nonparametric maximum likelihood method for assessing potentially time-varying vaccine efficacy (VE) against SARS-CoV-2 infection under staggered enrollment and time-varying community transmission, allowing crossover of placebo volunteers to the vaccine arm. Lin, D. Y., Gu, Y., Zeng, D., Janes, H. E., and Gilbert, P. B. (2021) doi:10.1093/cid/ciab630.

Changes in 1.5

Changes:

Removed C++11
Added throttle of threads for examples and vignette

From NEWS in the release

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("iDOVE", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-idove

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-iDOVE

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-iDOVE

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

13OK

CRAN check page ↗

Slowest check: 3.9 min · r-devel-windows-x86_64

Status changes

OK13 OK2026-08-05
NOTE12 OK, 1 NOTE2026-08-01
OK13 OK2026-06-09
ERROR12 OK, 1 ERROR2026-06-08
OK14 OK2026-04-22

Show 2 earlier changesHide 2 earlier changes

ERROR13 OK, 1 ERROR2026-04-18
OK14 OK2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 1.5

READMENoVignettesYes · 1 · dynamicNEWSYes · 33% structured · mentions 1.5Citation fileNoWebsitenot declared in DESCRIPTION

Help pages: 5
Examples that run: 100%3 run in a plain check
Exported functions with examples: 50%
Documented parameters: 100%
Return-value docs: 100%
Help pages citing references: 20%

Vignettes (1)

iDOVE-vignette PDF

How these are measured

Downloads

2.9K

CRAN downloads in the past year

Rank #17,339 · ~8/day · ~241/mo

Releases R versions

Daily download trend is not available in this view yet.

28130 days

74190 days

2.9K1 year

Compare downloads with other packages →

Also on361 r2u5 autocran

How downloads are counted

Dependencies

Declared dependencies

6 external dependencies (excludes base and recommended)

Installing iDOVE adds 2 packages (2 with compiled code, 2.8 MB of source tarballs). Heaviest: Rcpp 1.8 MB, RcppArmadillo 1.0 MB.

Depends (1)

R >= 3.5.0

Imports (5)

RcppmethodsstatsgraphicsRcppArmadillo

LinkingTo (2)

Rcpp RcppArmadillo

Suggests (2)

rmarkdown knitr

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

How these are counted

Code & Tests

Datasets

People & History

People (3)

Shannon T. Holloway

Author, Maintainer since 1.3 (2021)

Yu Gu

Author

Dan-Yu Lin

Author

Releases (3)

Pick two releases to compare their code metrics.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
1.5Latest
record
2023-12-14 · current release · diff ↗
R
R 4.3.0 released · 2023-04-21
1.4
record
2022-06-07 · diff ↗
R
R 4.2.0 released · 2022-04-22
1.3
record
2021-09-15
R
R 4.1.0 released · 2021-05-18

Package metadata

First published: 2021-09-15
Total releases: 3 / 5 yrs
License: GPL-2 OSI
Minimum R: ≥ 3.5.0
Bundled data: 128 KB / 1 file
Download size: 447 KB

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("iDOVE")

Format

Holloway, S. T., Gu, Y., & Lin, D. (2023). iDOVE: Durability of Vaccine Efficacy Against SARS-CoV-2 Infection (Version 1.5) [Computer software]. https://doi.org/10.32614/CRAN.package.iDOVE

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for iDOVE version 1.5 [Data set]. HJJB, LLC. Data release v2026-10-25. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-25, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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