R Observatory: Metrics for iDINGO version 1.0.4

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

iDINGO

1.0.4Package record

Integrative Differential Network Analysis in Genomics

0packages depend

2.8Kdownloads / year

–test coverage

11/13flavors OK

Overview

About

Maintained by Caleb A. ClassCRAN page ↗

Fits covariate dependent partial correlation matrices for integrative models to identify differential networks between two groups. The methods are described in Class et. al., (2018) doi:10.1093/bioinformatics/btx750 and Ha et. al., (2015) doi:10.1093/bioinformatics/btv406.

Changes in 1.0.4

Updated maintainer.

From NEWS.md in the release

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("iDINGO", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-idingo

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-iDINGO

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-iDINGO

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

2NOTE11OK

Check messages

NOTECRAN incoming feasibilityr-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Maintainer: ‘Caleb A. Class <cclass@butler.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Caleb", "A."),
                      family = "Class",
                      role = c("aut", "cre"),
                      email = "cclass@butler.edu"),
               person(given = c("Min", "Jin"),
                      family = "Ha",
                      role = "aut",
                      email = "mjha@mdanderson.org"))
as necessary.

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

NOTERd contentsr-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Rd files without \usage:
  ‘trans.Fisher.Rd’
\arguments should not be documented without \usage.

CRAN check page ↗

Slowest check: 1.6 min · r-oldrel-windows-x86_64

Status changes

NOTE11 OK, 2 NOTENow
NOTE12 OK, 2 NOTE2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 1.0.4

READMEYes · 170 wordsVignettesNoNEWSYes · 100% structured · mentions 1.0.4Citation fileYes · cites a publicationWebsitenot declared in DESCRIPTION

Help pages: 14includes a package overview page
Examples that run: 100%6 run in a plain check
Exported functions with examples: 55%
Documented parameters: not tracked
Return-value docs: not tracked
Help pages citing references: 14%

How these are measured

Downloads

2.8K

CRAN downloads in the past year

Rank #15,351 · ~8/day · ~232/mo

Releases R versions

Daily download trend is not available in this view yet.

30230 days

80190 days

2.8K1 year

Compare downloads with other packages →

Also on64 r2u1 autocran

How downloads are counted

Dependencies

Declared dependencies

6 external dependencies (excludes base and recommended)

Installing iDINGO adds 41 packages (21 with compiled code, 33 MB of source tarballs). Heaviest: bslib 5.6 MB, igraph 4.8 MB, visNetwork 4.1 MB.

Depends (1)

igraph

Imports (6)

mvtnorm glassoparallelGGMridge visNetwork scales

LinkingTo (0)

none

Suggests (0)

none

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

How these are counted

Code & Tests

Datasets

People & History

People (from the free-text Author field) (2)

Caleb A. Class

· added in 1.0.1

Min Jin Ha

Maintainer since 1.0.1 (2017), previously Min Jin Ha (1.0.0)

Releases (5)

Pick two releases to compare their code metrics.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
1.0.4Latest
record
2020-07-30 · current release · diff ↗
R
R 4.0.0 released · 2020-04-24
1.0.3
record
2019-09-06 · diff ↗
R
R 3.6.0 released · 2019-04-26
R
R 3.5.0 released · 2018-04-23
1.0.2
record
2017-10-12 · diff ↗
1.0.1
record
2017-08-24 · diff ↗
1.0.0
record
2017-08-22
R
R 3.4.0 released · 2017-04-21

Package metadata

First published: 2017-08-22
Total releases: 5 / 9 yrs
License: GPL-2 OSI
Bundled data: 220 KB / 2 files
Download size: 235 KB

Cite

Cite this package

Run in R for the authors' entry:

citation("iDINGO")

The package provides a citation file, so citation() returns the authors' own entry.

It points to 10.1093/bioinformatics/btx750, 10.1093/bioinformatics/btv406.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for iDINGO version 1.0.4 [Data set]. HJJB, LLC. Data release v2026-10-25. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-25, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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