R Observatory: Metrics for iClusterVB version 0.1.4

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

iClusterVB

0.1.4

Fast Integrative Clustering and Feature Selection for High Dimensional Data

0packages depend

2.2Kdownloads / year

–test coverage

13/13checks pass

Overview

About

Maintained by Abdalkarim AlnajjarFirst published 2024-07-304 releasesCRAN page ↗GitHub ↗

A variational Bayesian approach for fast integrative clustering and feature selection, facilitating the analysis of multi-view, mixed type, high-dimensional datasets with applications in fields like cancer research, genomics, and more.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("iClusterVB", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("AbdalkarimA/iClusterVB")

Development version from AbdalkarimA/iClusterVB. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-iclustervb

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-iClusterVB

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-iClusterVB

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 5.1 min · r-devel-windows-x86_64

Code health

None

Tests · ratio 0.00

not tracked

Coverage

100%

Documentation · exports

15

Dependencies · direct

Check history

OK2026-08-05
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-08-01
12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-06-09
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
WARNING2026-06-08
12 OK · 0 NOTE · 1 WARNING · 0 ERROR · 0 FAILURE
OK2026-05-02
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Show 3 earlier snapshots

NOTE2026-04-22
12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-04-18
11 OK · 2 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
NOTE2026-03-10
12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 913 wordsVignettesYes · dynamicpkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: 100%
Return-value docs: 100%
References docs: 14%

Downloads

2.2K

CRAN downloads in the past year

Rank #16,545 · ~6/day · ~185/mo

Releases R versions

Daily download trend is not available in this view yet.

18030 days

64490 days

2.2K1 year

Compare downloads with other packages →

Also on408 r2u3 autocran

Repository

GitHub ↗ abdalkarima/iclustervb

1Stars

0Forks

0Open issues

0Open PRs

0Releases

105Commits

1Contributors

105 commits · Last activity 2024-12-07

Stars over time

2024-09-19 · 12026-07-07 · 1

Repository practices

Upstream repositoryBeta

3 development-tooling and community-health practices detected across 3 families in the upstream repository

Checks run against github.com/abdalkarima/iclustervb on 2026-08-16.

Continuous integration (1)

GitHub Actions

Docs source (1)

README.Rmd

Lint, format, editor (1)

RStudio project

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

15 external dependencies (excludes base and recommended)

Depends (1)

R >= 4.0.0

Imports (15)

clusterclustMixType cowplot ggplot2graphicsgrDevicesmclust MCMCpack mvtnorm pheatmap poLCA RcppstatsutilsVarSelLCM

LinkingTo (2)

Rcpp RcppArmadillo

Suggests (4)

knitr rmarkdownsurvivalsurvminer

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

Datasets

People & History

People (2)

Maintainer (1)

Abdalkarim Alnajjar

Author, Maintainer, Copyright holder

Authors (2)

Abdalkarim Alnajjar

Author, Maintainer, Copyright holder

Zihang Lu

Author

Copyright holders (1)

Abdalkarim Alnajjar

Author, Maintainer, Copyright holder

Package Timeline

4 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
0.1.4Latest
2024-12-09 · current release · diff ↗
unarchivedReturned to CRAN
2024-12-09
archivedRemoved from CRAN
2024-12-05
issues were not corrected even on re-submission Use-after-free errors yet again
0.1.3
2024-12-04 · diff ↗
unarchivedReturned to CRAN
2024-12-04
archivedRemoved from CRAN
2024-11-14
issues were not corrected in time
0.1.2
2024-08-20 · diff ↗
unarchivedReturned to CRAN
2024-08-20
archivedRemoved from CRAN
2024-08-19
issues were not corrected in time
0.1.1
2024-07-30
R
R 4.4.0 released · 2024-04-24

Package metadata

First published: 2024-07-30
Total releases: 4 / 2 yrs
License: MIT + file LICENSE OSI
Minimum R: ≥ 4.0.0
Bundled data: 2.0 MB / 2 files
Download size: 2.4 MB
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("iClusterVB")

Format

Alnajjar, A., & Lu, Z. (2024). iClusterVB: Fast Integrative Clustering and Feature Selection for High Dimensional Data (Version 0.1.4) [Computer software]. https://doi.org/10.32614/CRAN.package.iClusterVB

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for iClusterVB version 0.1.4 [Data set]. HJJB, LLC. Data release v2026-08-16. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-16, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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