R Observatory: Metrics for iCluster version 2.1.0

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

This package was removed from CRAN on 2022-06-24. Its history is shown below.

Reason: check problems were not corrected despite reminders

Details below reflect version 2.1.0, its last release before removal.

iCluster

2.1.0Package record

Integrative clustering of multiple genomic data types

0packages depend

–downloads / year

–test coverage

–flavors OK

Overview

About

Maintained by Ronglai ShenCRAN page ↗

Integrative clustering of multiple genomic data types using a joint latent variable model.

Install

R (source archive)

url <- "https://cran.r-project.org/src/contrib/Archive/iCluster/iCluster_2.1.0.tar.gz"
pkgFile <- "iCluster_2.1.0.tar.gz"
download.file(url, pkgFile)
install.packages(pkgFile, type = "source", repos = NULL)

This package is no longer on CRAN, so install.packages() cannot fetch it by name. This downloads the last archived source (2.1.0) and builds it locally. Install its dependencies first, and note that building from source needs the usual compiler toolchain.

Health

CRAN checks

CRAN check results are not tracked yet.

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 2.1.0

READMENoVignettesNoNEWSNoCitation fileNoWebsitenot declared in DESCRIPTION

Help pages: 12
Examples that run: 43%3 run in a plain check · 4 hold no code
Exported functions with examples: 100%
Documented parameters: 100%
Return-value docs: 100%
Help pages citing references: 92%

Also includes 1 demo script (run with demo())

How these are measured

Downloads

Releases R versions

Daily download trend is not available in this view yet.

Compare downloads with other packages →

Also on66 r2u4 autocran1.5K conda_forge108 bioconda

How downloads are counted

Dependencies

Declared dependencies

4 external dependencies (excludes base and recommended)

Depends (7)

R >= 2.15.0latticecaTools gdata gtools gplotsparallel

Imports (0)

none

LinkingTo (0)

none

Suggests (0)

none

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

–indirect (not tracked)

Nothing depends on this yet.

How these are counted

Code & Tests

Datasets

People & History

People (1)

Ronglai Shen

Contributor

Maintainer since 1.2.0 (2010)

Releases (2)

Pick two releases to compare their code metrics.

R
R 4.3.0 released · 2023-04-21
archivedRemoved from CRAN
2022-06-24
check problems were not corrected despite reminders
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
R
R 4.0.0 released · 2020-04-24
R
R 3.6.0 released · 2019-04-26
R
R 3.5.0 released · 2018-04-23
R
R 3.4.0 released · 2017-04-21
R
R 3.3.0 released · 2016-05-03
R
R 3.2.0 released · 2015-04-16
R
R 3.1.0 released · 2014-04-10
R
R 3.0.0 released · 2013-04-03
2.1.0
record
2012-05-01 · diff ↗ ·
added 4 exports
iCluster2, tune.iCluster2, plotRI, plotHeatmap
R
R 2.15.0 released · 2012-03-30
R
R 2.14.0 released · 2011-10-31
R
R 2.13.0 released · 2011-04-13

Show 4 earlier eventsHide 4 earlier events

R
R 2.12.0 released · 2010-10-15
R
R 2.11.0 released · 2010-04-22
1.2.0
record
2010-01-26
R
R 2.10.0 released · 2009-10-26

Package metadata

First published: 2010-01-26
Total releases: 2 / 16 yrs
License: GPL (>= 2) OSI
Minimum R: ≥ 2.15.0
Bundled data: 2.2 MB / 6 files

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("iCluster")

Format

Shen, R. (n.d.). iCluster: Integrative clustering of multiple genomic data types (Version 2.1.0) [Computer software]. Retrieved October 26, 2026, from https://CRAN.R-project.org/package=iCluster

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for iCluster version 2.1.0 [Data set]. HJJB, LLC. Data release v2026-10-25. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-25, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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