R Observatory: Metrics for iC10 version 2.0.3

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

iC10

2.0.3Package record

A Copy Number and Expression-Based Classifier for Breast Tumours

0packages depend

11.3Kdownloads / year

–test coverage

13/13flavors OK

Overview

About

Maintained by Oscar M RuedaCRAN page ↗

Implementation of the classifier described in the paper Ali HR et al (2014) doi:10.1186/s13059-014-0431-1. It uses copy number and/or expression form breast cancer data, trains a Tibshirani's 'pamr' classifier with the features available and predicts the iC10 group.

Changes in 2.0.3

Fixed a bug in compare() that shows wrong x label in the centroids when there are missing data

From NEWS in the release

Install

R (CRAN)Ubuntu (r2u)

install.packages("iC10", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-ic10

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

Health

CRAN checks

13OK

CRAN check page ↗

Slowest check: 1.7 min · r-release-macos-x86_64

Status changes

OK13 OK2026-08-05
NOTE12 OK, 1 NOTE2026-08-01
OK14 OK2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 2.0.3

READMENoVignettesNoNEWSYes · 33% structured · mentions 2.0.3Citation fileNoWebsitenot declared in DESCRIPTION

Help pages: 11includes a package overview page
Examples that run: 100%9 run in a plain check
Exported functions with examples: 100%
Documented parameters: 100%
Return-value docs: 100%
Help pages citing references: 91%

How these are measured

Downloads

11.3K

CRAN downloads in the past year

Rank #3,441 · ~31/day · ~942/mo

Releases R versions

Daily download trend is not available in this view yet.

84530 days

3.1K90 days

11.3K1 year

Compare downloads with other packages →

Also on364 r2u1.7K bioconda

How downloads are counted

Dependencies

Declared dependencies

3 external dependencies (excludes base and recommended)

Installing iC10 adds 2 packages (0 with compiled code, 6.1 MB of source tarballs). Heaviest: iC10TrainingData 5.6 MB, pamr 517 KB. 1 more not on CRAN is not measured.

Depends (0)

none

Imports (3)

pamr impute iC10TrainingData

LinkingTo (0)

none

Suggests (0)

none

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

How these are counted

Code & Tests

People & History

People (1)

Oscar M Rueda

Author, Maintainer since 1.0.1 (2014)

Releases (10)

Pick two releases to compare their code metrics.

2.0.3Latest
record
2026-08-04 · current release · diff ↗
R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
unarchivedReturned to CRAN
2024-07-19
2.0.2
record
2024-07-19 · diff ↗
archivedRemoved from CRAN
2024-06-13
email to the maintainer is undeliverable
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
R
R 4.0.0 released · 2020-04-24
R
R 3.6.0 released · 2019-04-26
1.5
record
2019-02-08 · diff ↗
1.4.2
record
2018-08-21 · diff ↗
1.4.1
record
2018-08-20 · diff ↗
R
R 3.5.0 released · 2018-04-23

Show 9 earlier eventsHide 9 earlier events

R
R 3.4.0 released · 2017-04-21
R
R 3.3.0 released · 2016-05-03
1.1.3
record
2015-09-23 · diff ↗
R
R 3.2.0 released · 2015-04-16
1.1.2
record
2014-12-08 · diff ↗
1.1.1
record
2014-09-26 · diff ↗
1.0.2
record
2014-06-19 · diff ↗
1.0.1
record
2014-06-18
R
R 3.1.0 released · 2014-04-10

Package metadata

First published: 2014-06-18
Total releases: 10 / 12 yrs
License: GPL-3 OSI
Download size: 16 KB

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("iC10")

Format

Rueda, O. M. (2026). iC10: A Copy Number and Expression-Based Classifier for Breast Tumours (Version 2.0.3) [Computer software]. https://doi.org/10.32614/CRAN.package.iC10

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for iC10 version 2.0.3 [Data set]. HJJB, LLC. Data release v2026-10-23. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-23, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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