R Observatory: Metrics for hubEnsembles version 1.0.0

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

hubEnsembles

1.0.0Package record

Ensemble Methods for Combining Hub Model Outputs

1packages depend

6.1Kdownloads / year

96.9%test coverage

13/13flavors OK

Overview

About

Maintained by Li ShandrossCRAN page ↗GitHub ↗Website ↗Issues ↗

Functions for combining model outputs (e.g. predictions or estimates) from multiple models into an aggregated ensemble model output.

Changes in 1.0.0

hubEnsembles.Rmd article now explains how to ensemble samples using linear_pool()
linear_pool() supports requesting a subset of component model sample forecasts when ensembling samples (#144)
linear_pool() supports the specification of the compound task ID set, so that trajectory samples can be correctly ensembled (#144)
linear_pool() supports the simplest case of ensembling samples, where all component samples are collected and returned (#109)
linear_pool() now uses the argument derived_task_ids (derived_tasks is now deprecated) (#156)

From NEWS.md in the release

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("hubEnsembles", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("hubverse-org/hubEnsembles")

Development version from hubverse-org/hubEnsembles. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-hubensembles

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-hubEnsembles

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-hubEnsembles

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

13OK

CRAN check page ↗

Slowest check: 1.2 min · r-devel-windows-x86_64

Status changes

OK13 OK2026-08-05
NOTE12 OK, 1 NOTE2026-08-01
OK12 OK2026-04-25
NOTE11 OK, 3 NOTE2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 1.0.0

READMEYes · 177 wordsVignettesNoNEWSYes · 100% structured · mentions 1.0.0Citation fileNoWebsiteYes · pkgdown

The repository also keeps web-only articles.

Help pages: 8
Examples that run: 100%2 run in a plain check
Exported functions with examples: 100%
Documented parameters: 100%
Return-value docs: 100%
Help pages citing references: 0%

How these are measured

Downloads

6.1K

CRAN downloads in the past year

Rank #8,074 · ~17/day · ~504/mo

Releases R versions

Daily download trend is not available in this view yet.

52030 days

1.1K90 days

6.1K1 year

Compare downloads with other packages →

Also on69 r2u3 autocran

How downloads are counted

Repository

hubverse-org/hubensembles ↗Organization: hubverse-org

8Stars

1Forks

9Open issues

1Open PRs

5Releases

500Commits

12Commit identities

hubverser-package

500 commits · Last activity 2026-10-14 · 0% stars, 30d · Default branch at 1.0.0.9000, ahead of CRAN 1.0.0 (checked 2026-10-11) · Discussions: 1 post

Responsiveness

How these are sampled

PRs merged (all time): 86%
Median days to close, 50 most recently updated closed issues: 58
Median days to close, 50 most recently updated closed PRs: 6

Stars over time

2024-09-04 · 62026-07-07 · 8

How these are measured

PracticesBeta

18 development-tooling and community-health practices detected across 8 families in the upstream repository

Checks run against github.com/hubverse-org/hubensembles on 2026-10-11.

Continuous integration (2)

GitHub ActionsR CMD check workflow

The R CMD check workflow runs on Linux, macOS and Windows, and on R-devel

Governance and community (3)

Code of conductContributing guideCODEOWNERS

Docs source (4)

README.Rmdpkgdown

GitHub Pages site last deployed 2026-08-26 · The repository has a site deploy workflow

pkgdown site last built 2025-05-28

Coverage (1)

Coverage reporting

Show all practicesHide 4 practices

Reproducibility and dev environment (1)

data-raw/

CRAN release process (1)

cran-comments.md

Automation and maintenance (1)

Dependabot

Lint, format, editor (5)

lintrLint workflowAirVS CodeRStudio project

How this is detected·Detection ruleset v3 (2026-09-26)

AI coding toolsBeta

This repository shows signs of AI coding tools.

Claude Codefirst seen 2026-05-07
Commits: at least 5 crediting it in the message

Models named in its commits

Claude Sonnet 4.65 commits · May 2026

Counts are commits, not lines of code. Commits by a tool's accounts count once across all of its accounts. Commits crediting it are the largest count among its credit lines, a minimum.How this is detected·Detection ruleset v4 (updated 2026-09-27)

Dependencies

Declared dependencies

17 external dependencies (excludes base and recommended)

Installing hubEnsembles adds 39 packages (23 with compiled code, 23 MB of source tarballs). Heaviest: stringi 11 MB, fs 1.4 MB, openssl 1.1 MB.

Depends (1)

R >= 4.1

Imports (11)

cli distfromq dplyr hubUtils lifecycle matrixStats purrr rlangstatstidyr tidyselect

LinkingTo (0)

none

Suggests (7)

cowplot ggplot2 hubExamples hubVis knitr rmarkdown testthat

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

1direct

0indirect

Imports 1

Depends, Imports or LinkingTo, most downloaded first

modelimportance

How these are counted

Code & Tests

Datasets

People & History

People (7)

Li Shandross

Author, Maintainer since 0.1.8 (2024)

Author

Author

Contributor

Contributor

Contributor

Consortium of Infectious Disease Modeling Hubs

Copyright holder

Releases (3)

Pick two releases to compare their code metrics.

R
R 4.6.0 released · 2026-04-24
1.0.0Latest
record
2025-05-23 · current release · diff ↗
R
R 4.5.0 released · 2025-04-11
0.1.9
record
2024-10-02 · diff ↗
0.1.8
record
2024-09-26
R
R 4.4.0 released · 2024-04-24

Package metadata

First published: 2024-09-26
Total releases: 3 / 2 yrs
License: MIT + file LICENSE OSI
Additional repositories: hubverse-org.r-universe.dev
Minimum R: ≥ 4.1
Bundled data: 2.3 KB / 4 files
Download size: 72 KB

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("hubEnsembles")

Format

Shandross, L., Consortium of Infectious Disease Modeling Hubs, Howerton, E., Kamvar, Z. N., Krystalli, A., Ray, E. L., & Reich, N. G. (2025). hubEnsembles: Ensemble Methods for Combining Hub Model Outputs (Version 1.0.0) [Computer software]. https://doi.org/10.32614/CRAN.package.hubEnsembles

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for hubEnsembles version 1.0.0 [Data set]. HJJB, LLC. Data release v2026-10-18. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-18, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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