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hoardeR

Collect and Retrieve Annotation Data for Various Genomic Data Using Different Webservices

v0.10 · Apr 8, 2024 · GPL (>= 2)

Description

Cross-species identification of novel gene candidates using the NCBI web service is provided. Further, sets of miRNA target genes can be identified by using the targetscan.org API.

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CRAN Check Status

8 ERROR
6 OK
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r-devel-linux-x86_64-debian-clang ERROR
r-devel-linux-x86_64-debian-gcc ERROR
r-devel-linux-x86_64-fedora-clang ERROR
r-devel-linux-x86_64-fedora-gcc ERROR
r-devel-macos-arm64 ERROR
r-devel-windows-x86_64 ERROR
r-oldrel-macos-arm64 OK
r-oldrel-macos-x86_64 OK
r-oldrel-windows-x86_64 ERROR
r-patched-linux-x86_64 ERROR
r-release-linux-x86_64 OK
r-release-macos-arm64 OK
r-release-macos-x86_64 OK
r-release-windows-x86_64 OK
Check details (8 non-OK)
ERROR r-devel-linux-x86_64-debian-clang

whether package can be installed

Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/hoardeR.Rcheck/00install.out’ for details.
ERROR r-devel-linux-x86_64-debian-gcc

whether package can be installed

Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/hoardeR.Rcheck/00install.out’ for details.
ERROR r-devel-linux-x86_64-fedora-clang

whether package can be installed

Installation failed.
See ‘/data/gannet/ripley/R/packages/tests-clang/hoardeR.Rcheck/00install.out’ for details.
ERROR r-devel-linux-x86_64-fedora-gcc

whether package can be installed

Installation failed.
See ‘/data/gannet/ripley/R/packages/tests-devel/hoardeR.Rcheck/00install.out’ for details.
ERROR r-devel-macos-arm64

whether package can be installed

Installation failed.
See ‘/Volumes/Builds/packages/sonoma-arm64/results/4.6/hoardeR.Rcheck/00install.out’ for details.
ERROR r-devel-windows-x86_64

whether package can be installed

Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.6/hoardeR.Rcheck/00install.out' for details.
ERROR r-oldrel-windows-x86_64

re-building of vignette outputs

Error(s) in re-building vignettes:
--- re-building 'hoardeR-vignette.Rmd' using rmarkdown
! Package pdftex.def Error: File `f70f3733da0f2d6cc63063b4edd28e69a9e0b2b8.png'
 not found: using draft setting.

Error: processing vignette 'hoardeR-vignette.Rmd' failed with diagnostics:
LaTeX failed to compile D:/RCompile/CRANpkg/local/4.4/hoardeR.Rcheck/vign_test/hoardeR/vignettes/hoardeR-vignette.tex. See https://yihui.org/tinytex/r/#debugging for debugging tips. See hoardeR-vignette.log for more info.
--- failed re-building 'hoardeR-vignette.Rmd'

SUMMARY: processing the following file failed:
  'hoardeR-vignette.Rmd'

Error: Vignette re-building failed.
Execution halted
ERROR r-patched-linux-x86_64

whether package can be installed

Installation failed.
See ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/hoardeR.Rcheck/00install.out’ for details.

Check History

ERROR 10 OK · 0 NOTE · 0 WARNING · 4 ERROR · 0 FAILURE Mar 10, 2026
ERROR r-devel-linux-x86_64-debian-gcc

whether package can be installed

Installation failed.
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/hoardeR.Rcheck/00install.out’ for details.
ERROR r-devel-linux-x86_64-fedora-clang

whether package can be installed

Installation failed.
See ‘/data/gannet/ripley/R/packages/tests-clang/hoardeR.Rcheck/00install.out’ for details.
ERROR r-devel-linux-x86_64-fedora-gcc

whether package can be installed

Installation failed.
See ‘/data/gannet/ripley/R/packages/tests-devel/hoardeR.Rcheck/00install.out’ for details.
ERROR r-devel-macos-arm64

whether package can be installed

Installation failed.
See ‘/Volumes/Builds/packages/sonoma-arm64/results/4.6/hoardeR.Rcheck/00install.out’ for details.

Dependency Network

Dependencies Reverse dependencies bamsignals Biostrings data.table (>= 1.11.4) GenomicRanges GenomicTools.fileHandler httr IRanges KernSmooth knitr MASS R.utils (>= 2.6.0) RCurl rmarkdown Rsamtools (>= 1.30.0) S4Vectors +3 more dependencies hoardeR

Version History

new 0.10 Mar 10, 2026
updated 0.10 ← 0.9.4-2 diff Apr 7, 2024
updated 0.9.4-2 ← 0.9.4 diff Feb 11, 2019
updated 0.9.4 ← 0.9.2 diff Feb 6, 2019
updated 0.9.2 ← 0.9.1 diff Oct 30, 2016
updated 0.9.1 ← 0.9 diff Oct 10, 2016
updated 0.9 ← 0.1 diff Aug 31, 2016
updated 0.1 ← 0.0-2 diff Jun 29, 2015
updated 0.0-2 ← 0.0-1 diff Jun 6, 2014
new 0.0-1 Feb 19, 2014