R Observatory: Metrics for hirisplexr version 0.1.0

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

hirisplexr

0.1.0

From 'PLINK' to 'HIrisPlex'

0packages depend

1.6Kdownloads / year

0.0%test coverage

13/13checks pass

Overview

About

Maintained by Andrea GiardinaFirst published 2025-10-311 releasesCRAN page ↗GitHub ↗

Read 'PLINK' 1.9 binary datasets (BED/BIM/FAM) and generate the CSV files required by the Erasmus MC 'HIrisPlex' / 'HIrisPlex-S' webtool https://hirisplex.erasmusmc.nl/. It maps 'PLINK' alleles to the webtool's required 'rsID_Allele' columns (0/1/2/NA). No external tools (e.g., 'PLINK CLI') are required.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("hirisplexr", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("adhikari-statgen-lab/hirisplexr")

Development version from adhikari-statgen-lab/hirisplexr. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-hirisplexr

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-hirisplexr

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-hirisplexr

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 52 s · r-devel-windows-x86_64

Code health

Yes

Tests · ratio 0.19

0.0%

Coverage · measured lines

100%

Documentation · exports

3

Dependencies · direct

Check history

OK2026-08-05
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-08-01
12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 145 wordsVignettesYes · dynamicpkgdown siteNoNEWSYes · 67% structuredCode of conductNoContributing guideNo

Examples that run: 0%
Documented parameters: 100%
Return-value docs: 100%
References docs: 0%

Downloads

1.6K

CRAN downloads in the past year

Rank #23,642 · ~5/day · ~137/mo

Releases R versions

Daily download trend is not available in this view yet.

11530 days

41090 days

1.6K1 year

Compare downloads with other packages →

Also on60 r2u13 autocran

Repository

GitHub ↗ adhikari-statgen-lab/hirisplexr

1Stars

0Forks

0Open issues

0Open PRs

0Releases

5Commits

1Contributors

5 commits · Last activity 2025-08-05 · 0% stars, 30d

Stars over time

2025-11-17 · 12026-07-07 · 1

Repository practices

Upstream repositoryBeta

2 development-tooling and community-health practices detected across 2 families in the upstream repository

Checks run against github.com/adhikari-statgen-lab/hirisplexr on 2026-08-23.

Continuous integration (1)

GitHub Actions

CRAN release process (1)

cran-comments.md

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

5 external dependencies (excludes base and recommended)

Depends (1)

R >= 3.6

Imports (3)

BEDMatrix data.tableutils

LinkingTo (0)

none

Suggests (3)

testthat knitr rmarkdown

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

Datasets

People & History

People (1)

Maintainer (1)

Andrea Giardina

Author, Maintainer

Authors (1)

Andrea Giardina

Author, Maintainer

Package Timeline

1 release. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
0.1.0Latest
2026-03-10 · current release
R
R 4.5.0 released · 2025-04-11

Package metadata

First published: 2025-10-31
Total releases: 1 / 1 yrs
License: MIT + file LICENSE OSI
Minimum R: ≥ 3.6
Download size: 14 KB
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("hirisplexr")

Format

Giardina, A. (2025). hirisplexr: From 'PLINK' to 'HIrisPlex' (Version 0.1.0) [Computer software]. https://doi.org/10.32614/CRAN.package.hirisplexr

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for hirisplexr version 0.1.0 [Data set]. HJJB, LLC. Data release v2026-08-23. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-23, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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