R Observatory: Metrics for hierbase version 0.1.2

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

This package was removed from CRAN on 2022-08-10. Its history is shown below.

Reason: issues were not corrected in time

Details below reflect version 0.1.2, its last release before removal.

hierbase

0.1.2Package record

Enabling Hierarchical Multiple Testing

0packages depend

–downloads / year

–test coverage

–flavors OK

Overview

About

Maintained by Claude RenauxCRAN page ↗

Implementation of hierarchical inference based on Meinshausen (2008). Hierarchical testing of variable importance. Biometrika, 95(2), 265-278 and Renaux, Buzdugan, Kalisch, and Bühlmann, (2020). Hierarchical inference for genome-wide association studies: a view on methodology with software. Computational Statistics, 35(1), 1-40. The R-package 'hierbase' offers tools to perform hierarchical inference for one or multiple data sets based on ready-to-use (group) test functions or alternatively a user specified (group) test function. The procedure is based on a hierarchical multiple testing correction and controls the family-wise error rate (FWER). The functions can easily be run in parallel. Hierarchical inference can be applied to (low- or) high-dimensional data sets to find significant groups or single variables (depending on the signal strength and correlation structure) in a data-driven and automated procedure. Possible applications can for example be found in statistical genetics and statistical genomics.

Install

R (source archive)

url <- "https://cran.r-project.org/src/contrib/Archive/hierbase/hierbase_0.1.2.tar.gz"
pkgFile <- "hierbase_0.1.2.tar.gz"
download.file(url, pkgFile)
install.packages(pkgFile, type = "source", repos = NULL)

This package is no longer on CRAN, so install.packages() cannot fetch it by name. This downloads the last archived source (0.1.2) and builds it locally. Install its dependencies first, and note that building from source needs the usual compiler toolchain.

Health

CRAN checks

CRAN check results are not tracked yet.

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 0.1.2

READMEYes · 142 wordsVignettesYes · 1 · dynamicNEWSYes · 0% structured · does not mention 0.1.2Citation fileYes · cites a publicationWebsitenot declared in DESCRIPTION

Help pages: 6includes a package overview page
Examples that run: 100%5 run in a plain check
Exported functions with examples: 100%
Documented parameters: 99%
Return-value docs: 100%
Help pages citing references: 83%

How these are measured

Downloads

hierbase Releases R versions

Daily download trend is not available in this view yet.

Compare downloads with other packages →

Also on36 r2u

How downloads are counted

Dependencies

Declared dependencies

5 external dependencies (excludes base and recommended)

Depends (1)

R >= 4.0.0

Imports (6)

glmnet hdimethodsparallelstatsSIHR

LinkingTo (0)

none

Suggests (3)

knitrMASStestthat

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

–indirect (not tracked)

Nothing depends on this yet.

How these are counted

Code & Tests

People & History

People (2)

Claude Renaux

Author, Maintainer since 0.0.4 (2021)

Peter Bühlmann

Thesis advisor

Releases (4)

Pick two releases to compare their code metrics.

R
R 4.3.0 released · 2023-04-21
archivedRemoved from CRAN
2022-08-10
issues were not corrected in time
R
R 4.2.0 released · 2022-04-22
0.1.2
record
2021-11-08 · diff ↗
0.1.1
record
2021-11-03 · diff ↗
0.1.0
record
2021-10-09 · diff ↗
0.0.4
record
2021-10-03
R
R 4.1.0 released · 2021-05-18

Package metadata

First published: 2021-10-03
Total releases: 4 / 5 yrs
License: GPL-3 OSI
Minimum R: ≥ 4.0.0

Cite

Cite this package

Run in R for the authors' entry:

citation("hierbase")

The package provides a citation file, so citation() returns the authors' own entry.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for hierbase version 0.1.2 [Data set]. HJJB, LLC. Data release v2026-10-26. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-26, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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