R Observatory: Metrics for hdme version 0.6.0

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

hdme

0.6.0

High-Dimensional Regression with Measurement Error

0packages depend

3.1Kdownloads / year

95.4%test coverage

13/13checks pass

Overview

About

Maintained by Oystein SorensenFirst published 2018-03-0914 releasesCRAN page ↗GitHub ↗

Penalized regression for generalized linear models for measurement error problems (aka. errors-in-variables). The package contains a version of the lasso (L1-penalization) which corrects for measurement error (Sorensen et al. (2015) doi:10.5705/ss.2013.180). It also contains an implementation of the Generalized Matrix Uncertainty Selector, which is a version the (Generalized) Dantzig Selector for the case of measurement error (Sorensen et al. (2018) doi:10.1080/10618600.2018.1425626).

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("hdme", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("osorensen/hdme")

Development version from osorensen/hdme. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-hdme

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-hdme

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-hdme

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 6.6 min · r-devel-windows-x86_64

Code health

Yes

Tests · ratio 0.47

95.4%

Coverage · measured lines

100%

Documentation · exports

7

Dependencies · direct

Check history

OK2026-08-05
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-08-01
12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-04-22
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-04-18
13 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 356 wordsVignettesYes · dynamicpkgdown siteNoNEWSYes · 100% structuredCode of conductNoContributing guideNo

Examples that run: 91%
Documented parameters: 98%
Return-value docs: 100%
References docs: 28%

Downloads

3.1K

CRAN downloads in the past year

Rank #13,540 · ~8/day · ~255/mo

Releases R versions

Daily download trend is not available in this view yet.

16830 days

74990 days

3.1K1 year

Compare downloads with other packages →

Also on375 r2u21 autocran

Repository

GitHub ↗ osorensen/hdme

9Stars

3Forks

0Open issues

0Open PRs

12Releases

231Commits

4Contributors

License GPL-3.0 · 231 commits · Last activity 2023-05-19

Stars over time

2025-03-25 · 92026-07-07 · 9

Repository practices

Upstream repositoryBeta

5 development-tooling and community-health practices detected across 5 families in the upstream repository

Checks run against github.com/osorensen/hdme on 2026-08-16.

Continuous integration (1)

GitHub Actions

CRAN release process (1)

cran-comments.md

Docs source (1)

README.Rmd

Lint, format, editor (1)

RStudio project

Show all practices

Coverage (1)

Codecov

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

14 external dependencies (excludes base and recommended)

Depends (0)

none

Imports (7)

glmnet ggplot2 Rdpack Rcpp (>= 0.12.15)Rglpk rlangstats

LinkingTo (2)

Rcpp RcppArmadillo

Suggests (6)

knitr rmarkdown testthat dplyr tidyr covr

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

People & History

People (1)

Maintainer (1)

Oystein Sorensen

Author, Maintainer

Authors (1)

Oystein Sorensen

Author, Maintainer

Package Timeline

14 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
0.6.0Latest
2023-05-16 · current release · diff ↗
R
R 4.3.0 released · 2023-04-21
0.5.1
2023-02-28 · diff ↗
0.5.0
2022-07-20 · diff ↗
0.4.0
2022-07-03 · diff ↗
R
R 4.2.0 released · 2022-04-22
0.3.4
2021-09-02 · diff ↗
R
R 4.1.0 released · 2021-05-18
0.3.3
2020-05-18 · diff ↗
R
R 4.0.0 released · 2020-04-24
0.3.2
2019-11-11 · diff ↗
0.3.1
2019-05-20 · diff ↗
R
R 3.6.0 released · 2019-04-26

Show 8 earlier events

0.2.3
2019-04-12 · diff ↗
0.2.2
2019-03-07 · diff ↗
0.2.1
2018-10-15 · diff ↗
0.2.0
2018-05-19 · diff ↗
R
R 3.5.0 released · 2018-04-23
0.1.1
2018-03-30 · diff ↗
0.1.0
2018-03-09
R
R 3.4.0 released · 2017-04-21

Package metadata

First published: 2018-03-09
Total releases: 14 / 8 yrs
License: GPL-3 OSI
Download size: 378 KB
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("hdme")

Format

Sorensen, O. (2023). hdme: High-Dimensional Regression with Measurement Error (Version 0.6.0) [Computer software]. https://doi.org/10.32614/CRAN.package.hdme

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for hdme version 0.6.0 [Data set]. HJJB, LLC. Data release v2026-08-18. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-18, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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