This package was removed from CRAN on 2025-05-25. Its history is shown below.

Reason: repeated policy violation. On Internet access

Details below reflect version 4.0.7, its last release before removal.

haploR

4.0.7

Query 'HaploReg', 'RegulomeDB'

0packages depend

–downloads / year

–test coverage

–checks pass

Overview

About

Maintained by Ilya Y. Zhbannikov21 releasesCRAN page ↗

A set of utilities for querying 'HaploReg' https://pubs.broadinstitute.org/mammals/haploreg/haploreg.php, 'RegulomeDB' https://www.regulomedb.org/regulome-search/ web-based tools. The package connects to 'HaploReg', 'RegulomeDB' searches and downloads results, without opening web pages, directly from R environment. Results are stored in a data frame that can be directly used in various kinds of downstream analyses.

Install

R (source archive)Ubuntu (r2u)openSUSE (OBS)

url <- "https://cran.r-project.org/src/contrib/Archive/haploR/haploR_4.0.7.tar.gz"
pkgFile <- "haploR_4.0.7.tar.gz"
download.file(url, pkgFile)
install.packages(pkgFile, type = "source", repos = NULL)

This package is no longer on CRAN, so install.packages() cannot fetch it by name. This downloads the last archived source (4.0.7) and builds it locally. Install its dependencies first, and note that building from source needs the usual compiler toolchain.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-haplor

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-haploR

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

CRAN check results are not tracked yet.

Documentation

Documentation signals are not tracked yet for this package.

Downloads

haploR Releases R versions

Daily download trend is not available in this view yet.

Compare downloads with other packages →

Also on79 r2u35 autocran

Dependencies

Declared dependencies

11 external dependencies (excludes base and recommended)

Depends (1)

R >= 3.4.0

Imports (9)

httr XML tibble RUnit plyr DT RCurl RJSONIOmethods

LinkingTo (0)

none

Suggests (3)

knitr rmarkdown openxlsx

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

–indirect (not tracked)

Nothing depends on this yet.

Code & Tests

People & History

People (3)

Maintainer (1)

Ilya Y.

Author, Maintainer · added in 1.4.6

Authors (3)

Ilya Y.

Author, Maintainer · added in 1.4.6

Konstantin G.

Author · added in 2.0.3

Anatoliy I.

Author · added in 2.0.3

Listed in earlier versions (8)

K. G. Arbeev

no longer listed · 1.4.1 to 1.4.2

A. I. Yashin

no longer listed · 1.4.1 to 1.4.2

I. Y. Zhbannikov

no longer listed · 1.4.1 to 1.4.2

Konstantin Arbeev

no longer listed · 1.4.4

Anatoliy Yashin

no longer listed · 1.4.4

Ilya Zhbannikov

no longer listed · 1.4.4

Konstantin G

no longer listed · 1.4.6 to 1.6.0

Anatoliy I

no longer listed · 1.4.6 to 1.6.2

Package Timeline

21 releases. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
archivedRemoved from CRAN
2025-05-25
repeated policy violation On Internet access
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
4.0.7
2023-10-09 · diff ↗
unarchivedReturned to CRAN
2023-10-09
R
R 4.3.0 released · 2023-04-21
archivedRemoved from CRAN
2023-03-11
issues were not corrected in time
R
R 4.2.0 released · 2022-04-22
4.0.6
2021-09-19 · diff ↗
4.0.4
2021-09-06 · diff ↗
unarchivedReturned to CRAN
2021-09-06
archivedRemoved from CRAN
2021-07-29
check problems were not corrected in time
R
R 4.1.0 released · 2021-05-18
4.0.2
2020-11-09 · diff ↗
4.0.1
2020-07-13 · diff ↗

Show 23 earlier events

R
R 4.0.0 released · 2020-04-24
3.0.1
2019-04-30 · diff ↗
unarchivedReturned to CRAN
2019-04-30
archivedRemoved from CRAN
2019-04-27
policy violation Internet access failure after being reminded of the policy
R
R 3.6.0 released · 2019-04-26
2.0.9
2019-04-22 · diff ↗
2.0.7
2019-01-18 · diff ↗
2.0.6
2018-08-17 · diff ↗
2.0.5
2018-07-17 · diff ↗
2.0.4
2018-07-15 · diff ↗
2.0.3
2018-07-01 · diff ↗
1.6.4
2018-05-23 · diff ↗
R
R 3.5.0 released · 2018-04-23
1.6.2
2017-10-31 · diff ↗
1.6.1
2017-09-22 · diff ↗
1.6.0
2017-08-22 · diff ↗
1.5.1
2017-07-18 · diff ↗
1.4.6
2017-06-12 · diff ↗
1.4.4
2017-05-03 · diff ↗
R
R 3.4.0 released · 2017-04-21
1.4.2
2017-02-09 · diff ↗
1.4.1
2016-12-31
R
R 3.3.0 released · 2016-05-03

Package metadata

Total releases: 21
License: GPL-3 OSI
Download size: not tracked yet
Installed size: not tracked yet
With dependencies: not tracked yet

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