R Observatory: Metrics for hJAM version 1.0.0

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

This package was removed from CRAN on 2026-06-11. Its history is shown below.

Reason: email to the maintainer is undeliverable

Details below reflect version 1.0.0, its last release before removal.

hJAM

1.0.0

Hierarchical Joint Analysis of Marginal Summary Statistics

0packages depend

1.8Kdownloads / year

–test coverage

–checks pass

Overview

About

Maintained by Lai Jiang1 releasesCRAN page ↗GitHub ↗

Provides functions to implement a hierarchical approach which is designed to perform joint analysis of summary statistics using the framework of Mendelian Randomization or transcriptome analysis. Reference: Lai Jiang, Shujing Xu, Nicholas Mancuso, Paul J. Newcombe, David V. Conti (2020). "A Hierarchical Approach Using Marginal Summary Statistics for Multiple Intermediates in a Mendelian Randomization or Transcriptome Analysis." <bioRxiv>doi:10.1101/2020.02.03.924241.

Install

R (source archive)pak (dev)Ubuntu (r2u)openSUSE (OBS)

url <- "https://cran.r-project.org/src/contrib/Archive/hJAM/hJAM_1.0.0.tar.gz"
pkgFile <- "hJAM_1.0.0.tar.gz"
download.file(url, pkgFile)
install.packages(pkgFile, type = "source", repos = NULL)

This package is no longer on CRAN, so install.packages() cannot fetch it by name. This downloads the last archived source (1.0.0) and builds it locally. Install its dependencies first, and note that building from source needs the usual compiler toolchain.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("lailylajiang/hJAM")

Development version from lailylajiang/hJAM. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-hjam

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-hJAM

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

CRAN check results are not tracked yet.

Code health

None

Tests · ratio 0.00

not tracked

Coverage

100%

Documentation · exports

4

Dependencies · direct

Check history

NOTE2026-03-10
12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 154 wordsVignettesYes · dynamicpkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: 100%
Return-value docs: 71%
References docs: 57%

Downloads

1.8K

CRAN downloads in the past year

Rank #24,611 · ~5/day · ~147/mo

Releases R versions

Daily download trend is not available in this view yet.

030 days

13290 days

1.8K1 year

Compare downloads with other packages →

Also on98 r2u

Dependencies

Declared dependencies

6 external dependencies (excludes base and recommended)

Depends (0)

none

Imports (4)

ggplot2 ggpubr dplyr reshape2

LinkingTo (0)

none

Suggests (2)

knitr rmarkdown

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

–indirect (not tracked)

Nothing depends on this yet.

Code & Tests

Datasets

People & History

People (1)

Other (1)

Lai Jiang

Contributor

Package Timeline

1 release. R releases are shown for context.

archivedRemoved from CRAN
2026-06-11
email to the maintainer is undeliverable
R
R 4.6.0 released · 2026-04-24
1.0.0
2026-03-10
R
R 4.5.0 released · 2025-04-11

Package metadata

Total releases: 1
License: MIT + file LICENSE OSI
Bundled data: 169 KB / 5 files
Download size: 651 KB
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("hJAM")

Format

Jiang, L. (n.d.). hJAM: Hierarchical Joint Analysis of Marginal Summary Statistics (Version 1.0.0) [Computer software]. Retrieved August 15, 2026, from https://CRAN.R-project.org/package=hJAM

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for hJAM version 1.0.0 [Data set]. HJJB, LLC. Data release v2026-08-15. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-15, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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