R Observatory: Metrics for gtexture version 1.0.1

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

gtexture

1.0.1Package record

Generalized Application of Co-Occurrence Matrices and Haralick Texture

0packages depend

5.1Kdownloads / year

56.8%test coverage

13/13flavors OK

Overview

About

Maintained by Rowan Barker-ClarkeCRAN page ↗GitHub ↗Website ↗Issues ↗

Generalizes application of gray-level co-occurrence matrix (GLCM) metrics to objects outside of images. The current focus is to apply GLCM metrics to the study of biological networks and fitness landscapes that are used in studying evolutionary medicine and biology, particularly the evolution of cancer resistance. The package was developed as part of the author's publication in Physics in Medicine and Biology Barker-Clarke et al. (2023) doi:10.1088/1361-6560/ace305. A general reference to learn more about mathematical oncology can be found at Rockne et al. (2019) doi:10.1088/1478-3975/ab1a09.

Changes in 1.0.1

Updated README and cleaned documentation

Planned future features still include

Real word data examples uploaded with package
Gray level run statistics

From NEWS.md in the release

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)

install.packages("gtexture", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("rbarkerclarke/gtexture")

Development version from rbarkerclarke/gtexture. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-gtexture

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-gtexture

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

Health

CRAN checks

13OK

CRAN check page ↗

Slowest check: 2.2 min · r-oldrel-windows-x86_64

Status changes

OK13 OK2026-08-05
NOTE12 OK, 1 NOTE2026-08-01
OK13 OK2026-05-02
ERROR11 OK, 1 ERROR2026-04-25
OK14 OK2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 1.0.1

README· In the repository, left out of the releaseVignettesNoNEWSYes · 67% structured · mentions 1.0.1Citation fileNoWebsiteYes · pkgdown

Help pages: 25 (1 internal)
Examples that run: 95%19 run in a plain check · 1 hold no code
Exported functions with examples: 80%
Documented parameters: 99%
Return-value docs: 100%
Help pages citing references: 0%

How these are measured

Downloads

5.1K

CRAN downloads in the past year

Rank #12,110 · ~14/day · ~425/mo

Releases R versions

Daily download trend is not available in this view yet.

31730 days

91090 days

5.1K1 year

Compare downloads with other packages →

Also on68 r2u

How downloads are counted

Repository

rbarkerclarke/gtexture ↗Account: rbarkerclarke

0Stars

1Forks

2Open issues

0Open PRs

0Releases

109Commits

10Commit identities

109 commits · Last activity 2025-09-02 · The default branch showed an older version (0.1.0) than CRAN on 2026-10-21

Responsiveness

How these are sampled

PRs merged (all time): 83%
Median days to close, 50 most recently updated closed issues: not measured
Median days to close, 50 most recently updated closed PRs: 0

Forks over time

2022-07-26 · 12026-07-07 · 1

How these are measured

PracticesBeta

6 development-tooling and community-health practices detected across 5 families in the upstream repository

Checks run against github.com/rbarkerclarke/gtexture on 2026-10-21.

Continuous integration (2)

GitHub ActionsR CMD check workflow

The R CMD check workflow runs on Linux, macOS and Windows, and on R-devel

Docs source (1)

GitHub Pages site last deployed 2025-09-02

Coverage (1)

Coverage reporting

Research and citation (1)

JOSS paper

Show all practicesHide 1 practice

Lint, format, editor (1)

RStudio project

How this is detected·Detection ruleset v4 (2026-10-20)

Dependencies

Declared dependencies

8 external dependencies (excludes base and recommended)

Installing gtexture adds 114 packages (60 with compiled code, 94 MB of source tarballs). Heaviest: stringi 11 MB, ggplot2 6.0 MB, bslib 5.6 MB.

Depends (0)

none

Imports (7)

dlookr dplyr fitscape igraph magrittr rlang tidyr

LinkingTo (0)

none

Suggests (2)

statstestthat

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

How these are counted

Code & Tests

People & History

People (4)

Rowan Barker-Clarke

Author, Maintainer since 1.0.0 (2024)

Jacob Scott

Author

Raoul Wadhwa

Author

Davis Weaver

Author

Releases (2)

Pick two releases to compare their code metrics.

R
R 4.6.0 released · 2026-04-24
1.0.1Latest
record
2025-09-02 · current release · diff ↗
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
1.0.0
record
2024-04-08
R
R 4.3.0 released · 2023-04-21

Package metadata

First published: 2024-04-08
Total releases: 2 / 2 yrs
License: MIT + file LICENSE OSI
Download size: 20 KB

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("gtexture")

Format

Barker-Clarke, R., Scott, J., Wadhwa, R., & Weaver, D. (2025). gtexture: Generalized Application of Co-Occurrence Matrices and Haralick Texture (Version 1.0.1) [Computer software]. https://doi.org/10.32614/CRAN.package.gtexture

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for gtexture version 1.0.1 [Data set]. HJJB, LLC. Data release v2026-10-23. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-23, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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