R Observatory: Metrics for groupedHyperframe version 0.4.6

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

groupedHyperframe

0.4.6Package record

Grouped Hyper Data Frame

0packages depend

3.3Kdownloads / year

–test coverage

11/12flavors OK

Overview

About

Maintained by Tingting ZhanCRAN page ↗

Extensions of "hyper data frame" (from package 'spatstat.geom') with a grouping structure. The author has retired from academic research. Accordingly, this package should not be considered a validated tool for use in peer-reviewed publications or as the basis for grant applications. Backward compatibility with user-code published in doi:10.1093/bioinformatics/btaf430 is not maintained in versions >= 0.4.0 (June 2026) of this package. The authors of those publications are the appropriate contacts for reproducibility inquiries.

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("groupedHyperframe", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-groupedhyperframe

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-groupedHyperframe

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-groupedHyperframe

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

1WARNING11OK

Check messages

WARNINGS3 generic/method consistencyr-oldrel-macos-arm64

2026-03-11 08:33:55.062 R[71561:696351] XType: Using static font registry.
See section ‘Generic functions and methods’ in the ‘Writing R
Extensions’ manual.

WARNINGfor code/documentation mismatchesr-oldrel-macos-arm64

2026-03-11 08:34:02.653 R[77591:705547] XType: Using static font registry.
2026-03-11 08:34:03.971 R[78508:707123] XType: Using static font registry.
2026-03-11 08:34:04.932 R[78841:707678] XType: Using static font registry.

WARNINGfor missing documentation entriesr-oldrel-macos-arm64

2026-03-11 08:34:01.375 R[77425:705094] XType: Using static font registry.
All user-level objects in a package should have documentation entries.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.

WARNINGreplacement functionsr-oldrel-macos-arm64

2026-03-11 08:33:56.118 R[72853:698191] XType: Using static font registry.
The argument of a replacement function which corresponds to the right
hand side must be named ‘value’.

NOTER code for possible problemsr-oldrel-macos-arm64

2026-03-11 08:33:58.366 R[76079:702733] XType: Using static font registry.

NOTERd \usage sectionsr-oldrel-macos-arm64

2026-03-11 08:34:06.010 R[79731:708904] XType: Using static font registry.
The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.

NOTEdependencies in R coder-oldrel-macos-arm64

2026-03-11 08:33:54.093 R[70753:695078] XType: Using static font registry.

NOTEforeign function callsr-oldrel-macos-arm64

2026-03-11 08:33:57.048 R[74091:699914] XType: Using static font registry.
See chapter ‘System and foreign language interfaces’ in the ‘Writing R
Extensions’ manual.

NOTEwhether startup messages can be suppressedr-oldrel-macos-arm64

2026-03-11 08:33:53.153 R[70283:694213] XType: Using static font registry.

It looks like this package (or a package it requires) has a startup
message which cannot be suppressed: see ?packageStartupMessage.

CRAN check page ↗

Slowest check: 2.5 min · r-oldrel-macos-x86_64

Status changes

WARNING11 OK, 1 WARNINGNow
WARNING13 OK, 1 WARNING2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 0.4.6

READMEYes · 293 wordsVignettesNoNEWSYes · 100% structured · does not mention 0.4.6Citation fileNoWebsitenot declared in DESCRIPTION

Help pages: 6includes a package overview page
Examples that run: 100%2 run in a plain check
Exported functions with examples: 25%
Documented parameters: 89%
Return-value docs: 100%
Help pages citing references: 0%

How these are measured

Downloads

3.3K

CRAN downloads in the past year

Rank #12,830 · ~9/day · ~278/mo

Releases R versions

Daily download trend is not available in this view yet.

31630 days

88190 days

3.3K1 year

Compare downloads with other packages →

Also on222 r2u1 autocran

How downloads are counted

Repository

tingtingzhan/groupedhyperframe ↗Historical

Last recorded for this package on 2026-08-23. This package no longer links to it, so this repository is no longer tracked.

How these are measured

PracticesHistoricalBeta

2 development-tooling and community-health practices detected across 2 families in the repository last recorded for this package

Checks last ran against github.com/tingtingzhan/groupedhyperframe on 2026-08-09. This package no longer links to it, so this is no longer updated.

Coverage (1)

Coverage reporting (Codecov)

Lint, format, editor (1)

RStudio project

How this is detected·Detection ruleset v4 (2026-10-20)

Dependencies

Declared dependencies

3 external dependencies (excludes base and recommended)

Installing groupedHyperframe adds 7 packages (6 with compiled code, 4.7 MB of source tarballs). Heaviest: spatstat.data 2.9 MB, spatstat.geom 816 KB, cli 629 KB.

Depends (1)

R >= 4.6

Imports (2)

cli spatstat.geom

LinkingTo (0)

none

Suggests (2)

survivalspatstat.data

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

How these are counted

Code & Tests

People & History

People (1)

Tingting Zhan

Author, Maintainer since 0.1.0 (2025)

Listed in earlier versions (1)

Inna Chervoneva

no longer listed · 0.1.0 to 0.3.3

Releases (17)

Pick two releases to compare their code metrics.

0.4.6Latest
record
2026-10-11 · current release · diff ↗
0.4.5
record
2026-08-25 · diff ↗
0.4.4
record
2026-07-28 · diff ↗ ·
removed 1 export
as.vectorlist
0.4.3
record
2026-06-21 · diff ↗
0.4.2
record
2026-06-13 · diff ↗ ·
removed 2 exports
aggregate_quantile, unique_or_identity
unarchivedReturned to CRAN
2026-05-19
0.4.1
record
2026-05-19 · diff ↗ ·
removed 186 exports
$<-.groupedHyperframe, [.cumv, [.groupedHyperframe, [.ppp_tzh, append_marks<-, append_marks<-.ppp, append_marks<-.psp, append_marks<-.tess, .disrecommend2theo, .disrecommend2theo.fv, .disrecommend2theo.fvlist, .disrecommend2theo.hyperframe, .illegal2theo, .illegal2theo.fv, .illegal2theo.fvlist, .illegal2theo.hyperframe, .nncross, .ns_generic, .rmax, .rmax.fv, .rmax.hyperframe, .rmax.ppp, .rmax.ppplist, Emark_, Emark_.hyperframe, Emark_.ppp, Emark_.ppplist, Gcross_, Gcross_.hyperframe, Gcross_.ppp and 156 more

added 4 exports
aggregate2, aug4gam, pppBy, unique_or_identity
R
R 4.6.0 released · 2026-04-24
archivedRemoved from CRAN
2026-03-17
the maintainer's request with comment 'Active development of these R packages is temporarily suspended Until further notice, these packages should not be used as a basis for research grant applications, or cited as an actively maintained tool.'
0.3.6
record
2026-03-10 · diff ↗
0.3.5
record
2026-03-02 · diff ↗
0.3.4
record
2026-02-01 · diff ↗ ·
added 7 exports
interpSpline_.fv, ksmooth.fv, smooth.spline.fv, visualize_vtrapz.ksmooth, visualize_vtrapz.smooth.spline, visualize_vtrapz.spline, visualize_vtrapz.xyVector
0.3.3
record
2026-01-21 · diff ↗ ·
removed 7 exports
cumvtrapz.default, foobar, kerndens.default, summary_fv, superimpose.groupedHyperframe, visualize_vtrapz.ecdf, visualize_vtrapz.fvlist

added 36 exports
[.cumv, append_marks<-.psp, append_marks<-.tess, .ns_generic, Math.fvlist, Math.ppplist, Math.psp, Math.tess, Summary.fvlist, Summary.ppp, Summary.ppplist, Summary.psp, Summary.tess, as.list.fvlist, attr_, attr_.anylist, attr_.hyperframe, cli_Netlify_, cli_book_, cumvtrapz.numeric, global_envelope_test_, global_envelope_test_.anylist, global_envelope_test_.hyperframe, kerndens.numeric, print.cumv, print.summary.groupedHyperframe, print.vectorlist, rds2versiondate, rlabelRes, rlabelRes.hyperframe and 6 more
0.3.2
record
2025-11-25 · diff ↗ ·
removed 6 exports
aggregate_fv, cumtrapz.fv, summary.fvlist, trapz.fv, vtrapz.default, vtrapz.fv

added 5 exports
cumvtrapz.fvlist, cumvtrapz.hyperframe, keyval, keyval.fvlist, keyval.hyperframe
0.3.1
record
2025-10-30 · diff ↗ ·
removed 12 exports
.kmeans, .kmeans.ppp, aggregate.groupedHyperframe, log.ppp, log10.ppp, log1p.ppp, log2.ppp, split_kmeans, split_kmeans.default, split_kmeans.hyperframe, split_kmeans.listof, vignette_methods

added 15 exports
Math.ppp, aggregate.hyperframe, as.groupedHyperframe.groupedData, cli_QuartoPub_, kmeans.hyperframe, kmeans.ppp, kmeans.ppplist, loess.fv, methods2kable, plot.pppkm, print.pppkm, split.hyperframekm, split.pppkm, split.pppkmlist, visualize_vtrapz.loess
0.3.0
record
2025-10-14 · diff ↗ ·
removed 12 exports
mark_name<-, .slice, aggregate_by_, aggregate_kerndens, aggregate_num, check_fvlist, dist_ppp, fv_ppp, is.finite.fv, key1.fv, key1val.fv, mark_names

added 110 exports
[.ppp_tzh, append_marks<-, append_marks<-.ppp, .disrecommend2theo, .disrecommend2theo.fv, .disrecommend2theo.fvlist, .disrecommend2theo.hyperframe, .illegal2theo, .illegal2theo.fv, .illegal2theo.fvlist, .illegal2theo.hyperframe, .rmax, .rmax.fv, .rmax.hyperframe, .rmax.ppp, .rmax.ppplist, Emark_.hyperframe, Emark_.ppp, Emark_.ppplist, Gcross_.hyperframe, Gcross_.ppp, Gcross_.ppplist, Jcross_.hyperframe, Jcross_.ppp, Jcross_.ppplist, Kcross_.hyperframe, Kcross_.ppp, Kcross_.ppplist, Kmark_.hyperframe, Kmark_.ppp and 80 more

Show 6 earlier eventsHide 6 earlier events

0.2.4
record
2025-06-27 · diff ↗
0.2.3
record
2025-06-05 · diff ↗ ·
removed 3 exports
dist_ppplist, fv_ppplist, getGroupsFormula.groupedHyperframe

added 13 exports
$<-.groupedHyperframe, .kmeans, .kmeans.ppp, Kmark_, as.matrix.pairwise_cor_spatial, log1p.ppp, pairwise_cor_spatial, pairwise_cor_spatial.ppp, pairwise_cor_spatial.ppplist, split_kmeans, split_kmeans.default, split_kmeans.hyperframe, split_kmeans.listof
R
R 4.5.0 released · 2025-04-11
0.2.1
record
2025-04-01 · diff ↗ ·
removed 5 exports
key1nonfinite<-, cumtrapz.fvlist, dist_hyperframe, fv_hyperframe, key1val.fvlist

added 6 exports
.slice, as.groupedHyperframe.data.frame, mc_identical_by, op_hyperframe, pmean, pmedian
0.1.0
record
2025-03-25
R
R 4.4.0 released · 2024-04-24

Package metadata

First published: 2025-03-25
Total releases: 17 / 1 yrs
License: GPL-2 OSI
Minimum R: ≥ 4.6
Download size: 8.1 KB

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("groupedHyperframe")

Format

Zhan, T. (2026). groupedHyperframe: Grouped Hyper Data Frame (Version 0.4.6) [Computer software]. https://doi.org/10.32614/CRAN.package.groupedHyperframe

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for groupedHyperframe version 0.4.6 [Data set]. HJJB, LLC. Data release v2026-10-23. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-23, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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